Plant FIBer expression Database

Potri.007G108800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G108900
[exp]
1222 / 0 ND /
Potri.005G059900
[exp]
1065 / 0 ND /
Potri.005G059801
[exp]
89 / 1e-21 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019232
[exp]
828 / 0 ND /
Lus10004280
[exp]
828 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00266 Aminotran_5 Aminotransferase class-V
Representative CDS sequence
>Potri.007G108800.1 pacid=42766406 polypeptide=Potri.007G108800.1.p locus=Potri.007G108800 ID=Potri.007G108800.1.v4.1 annot-version=v4.1
ATGGGAAAGGAACTAGAGCAATCCATGTTGAGAGAGACCACCCATAGAGCTCAAGTTATGACCTTAAAAAATACTCGAACTTCTACCGTTTTGGAAAACA
ACTCACCGTCGGTCACAACACTTAGCTGTGGTTCTTCATCTTCTTTAATATCGTCATCTATTGAACATCTTTGTGGTTCCTCTGAATCCTTTAGAACTCT
AAATAATGGTGGCACAAAGGGTAACTCCACTGAAAGAAGGCTGGCATGGTTGCGCTCTCAAATTGTTGGCGATGATGTAGAGTTTGATTCTCCATTTGGT
AGAAGAAGACTCACCTATGCCGATCATACTGCCTCCGGCCGATCTCTTCGCTATATAGAGAATTTCATCATCAAGAATGTTCTTCCCTTTTACGGTAATA
CACACACTAGTGACAGTCATGTGGGGCATCGGACCACAAAAATGTTGCATGAAGCTGCTGAATATATCAAGAAATGCTTGGGTGGTAGACAAAATGATGC
AATCATGTTTTGTGGGTCGGGCACAACCGCGGCTATTAAAAGATTACAAGAAGTAATTGGGATCGCCGTGCCATCAACTTTGAGAGAGAGGCTGATAAAA
TGCCTGAGTAATGAAGAGAGATGGGTAGTTTTTGTCGGTCCTTATGAGCACCACTCGAATCTCCTCTCATGGAGGCAAAGCTTAGCTGAAGTGATAGAGA
TAGGTTTAGATGACAATGGCTTGATAGACATTGAAGATCTAAGACGACGACTTGAAACGTATAGACATGCAAACAGGCCAATTTTAGGCTCTTTCTCTGC
GAGTAGTAATGTGACAGGGATTTCCTCAGATACTCGAGGAATTTCTCAACTTCTTCATCAATATGGTGGATTTGCTTGTTTTGATTTTGCTGCAAGCGGC
CCATATGAGAAAATTGACATGAGATCTGGAAAGTTTGATGGTTATGATGCTATTTTCCTTAGCCCACACAAATTTCTTGGGGGGCCTGGATCGCCAGGAA
TACTTTTGATGAGAAAAGCCCTTTATCAATTGCGATCTTCTGCTCCCTCAACTTGTGGAGGTGGAACTGTTAACTATGTAAATGGTTTCAGTGAAAAGGA
TACACTGTACTTGAATGATATAGAGGAGAGAGAGAGTGGAGGAACTCCTCAAATAATCCAAACCATCAGAGCATCGTTGGCTTTCTGGGTTAAAGAATAT
ATTAGCCACCAAGTAATTAAAGAACAAGAGGATATTTACATAGAAAAGGCACTAAACAGGCTCCTCCCAAATAAAAATATATGGGTTTTAGGTAACACGA
CTGCCAGGCGACAAGCTATACTGTCCTTTCTCATATACTCTACCTCGAACTCTTCATCGACTGGCATGATACATGAGCGTGATGGAACTGATAACAAAGA
CGTCAATGATGAGGTTCTTTATATGTGGAGAGAGACAGGGAAGAGAAGAGGCAAACCTCTCCACGGACCTTTTATAGCAGCACTCCTTAACGATGTATTT
GGTATTCAAGCTCGAGGTGGCTGTGCTTGTGCTGGACCTTATGGTCATAATCTGCTCCATGTCAACGAGCCTAGCACCCTAGCCATCAGATCTGCCATAG
AAAAGGGTTATGCTGGAGTGAAGCCAGGATGGACAAGACTTAGCTTCCCCTACTACATGTTCAACGAGGAATTTGAGTTCATTCTTACGGCAATTGAGTT
TTTAGCCATTTACGGCCATCGATTTCTCCCATTGTATCACTTCAACTGGAAAACTGGTAGTTGGACTTTCAAAAAAAGGGAATTTAAAGACCTAGTGGTT
GAAGAAAACAAGGACAATATTAACAAGTTTGAATCATATCTGATAAGGGCTAAACAGATTGTAAAACTCCTTCCCAAATTCCCTTCCCAGCGTAAGATTC
CACAGGACATAAACCCCAACCTCTTGTTCTTCCAGGTCTAG
AA sequence
>Potri.007G108800.1 pacid=42766406 polypeptide=Potri.007G108800.1.p locus=Potri.007G108800 ID=Potri.007G108800.1.v4.1 annot-version=v4.1
MGKELEQSMLRETTHRAQVMTLKNTRTSTVLENNSPSVTTLSCGSSSSLISSSIEHLCGSSESFRTLNNGGTKGNSTERRLAWLRSQIVGDDVEFDSPFG
RRRLTYADHTASGRSLRYIENFIIKNVLPFYGNTHTSDSHVGHRTTKMLHEAAEYIKKCLGGRQNDAIMFCGSGTTAAIKRLQEVIGIAVPSTLRERLIK
CLSNEERWVVFVGPYEHHSNLLSWRQSLAEVIEIGLDDNGLIDIEDLRRRLETYRHANRPILGSFSASSNVTGISSDTRGISQLLHQYGGFACFDFAASG
PYEKIDMRSGKFDGYDAIFLSPHKFLGGPGSPGILLMRKALYQLRSSAPSTCGGGTVNYVNGFSEKDTLYLNDIEERESGGTPQIIQTIRASLAFWVKEY
ISHQVIKEQEDIYIEKALNRLLPNKNIWVLGNTTARRQAILSFLIYSTSNSSSTGMIHERDGTDNKDVNDEVLYMWRETGKRRGKPLHGPFIAALLNDVF
GIQARGGCACAGPYGHNLLHVNEPSTLAIRSAIEKGYAGVKPGWTRLSFPYYMFNEEFEFILTAIEFLAIYGHRFLPLYHFNWKTGSWTFKKREFKDLVV
EENKDNINKFESYLIRAKQIVKLLPKFPSQRKIPQDINPNLLFFQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G108800
[exp]
0 1
AT4G08850 Leucine-rich repeat receptor-l... Potri.015G123100
[exp]
3.46 0.7693
AT1G47670 Transmembrane amino acid trans... Potri.004G181100
[exp]
14.83 0.7501
AT5G10770 Eukaryotic aspartyl protease f... Potri.006G232600
[exp]
18.89 0.7690
AT2G29290 NAD(P)-binding Rossmann-fold s... Potri.010G142600
[exp]
24.97 0.6746 SAG13.3
Potri.002G252050
[exp]
33.54 0.7426
Potri.014G003683
[exp]
40.31 0.7426
Potri.019G073801
[exp]
41.83 0.7426
AT4G13440 Calcium-binding EF-hand family... Potri.019G026900
[exp]
46.15 0.7424
Potri.018G090350
[exp]
46.46 0.7389
AT2G24600 Ankyrin repeat family protein ... Potri.014G050532
[exp]
50.27 0.7396

Potri.007G108800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.