Plant FIBer expression Database

Potri.007G108900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G108800
[exp]
1199 / 0 ND /
Potri.005G059900
[exp]
1081 / 0 ND /
Potri.005G059801
[exp]
89 / 1e-21 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019232
[exp]
827 / 0 ND /
Lus10004280
[exp]
825 / 0 ND /
Lus10040331
[exp]
44 / 0.0004 AT3G55150 449 / 2e-150 exocyst subunit exo70 family protein H1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF00266 Aminotran_5 Aminotransferase class-V
Representative CDS sequence
>Potri.007G108900.1 pacid=42766707 polypeptide=Potri.007G108900.1.p locus=Potri.007G108900 ID=Potri.007G108900.1.v4.1 annot-version=v4.1
ATGGGAAAGGAACTAGAGCAATCCATGTTGAGAGAGACCACCCCTAGGGCTCAAGTTACGACCTCAAAAGACACTAGAACTTCTACCGTTTTGGAAAACA
ACTCGCCCTCGGTCACAACAATTAGCTGTAGTTCTTCATCTTCTTCAATATCGTCATCCATTGAACATCTTTGTGGTTCCTCCGAATCCTTTAGAACACT
AGAGATTGGTGTCCCAAAGAGTAACTCCACTGAAAAAAAGCTGGCATGGTTGCGCTCTCAAATTGTTGGCGATGATGTAGAGTTTGATTCTCCATTTGGT
AGAAGAAGACTCACCTATGCTGATCATACGGCCTCCGGCCGATCTCTTCGCTATATTGAGAATTTTATCATCAACAATGTTCTTCCCTTTTACGGGAATA
CACATACTAGTGACAGTCATGTGGGGCATCGGACCACAAAAATGTTGCATGAAGCTGCTGAATATATCAAGAAATGCTTGGGTGGTGGACAAAATGATGC
AATCATGTTTTGTGGCTCGGGCACAACCGCAGCTATTAAAAGATTACAAGAAGTAATTGGGATCGCCGTGCCATCAACTTTTAGAGAGAGGCTAATAAAA
TGCCTGAGTAATGAAGAGAGATGGGTAGTTTTTGTCGGTCCTTATGAGCATCACTCGAATCTCCTCTCATGGAGGCAAAGCTTAGCTGAAGTGATAGAGA
TAGGTTTGGATGACAATGGTTTGATAGACATTGAAGATCTAAGACGACGACTTGAAACGTATAGACATGCAAACAGGCCAATTTTGGGCTCTTTCTCTGC
AAGTAGTAATGTGACAGGGATTTACTCGGACACTCGAGGAATTTCTCAACTTCTTCATCAATATGGTGGATTTGCTTGTTTTGATTTTGCTGCAAGCGGC
CCATATGTGAAAATTAACATGAGATCCGGAGAGGTTGATGGTTATGATGGTATTTTTCTTAGCCCACACAAATTTCTTGGGGGGCCTGGATCGCCAGGAA
TACTTTTGATGAGCAAAGCCCTTTATCAATTGGGATCTTCTGCTCCGTCAACTTGTGGAGGTGGAACAGTTAACTACGTAAATGGTTTCAGTGAAAAGGA
TACACTGTACTTGAATGATATAGAGGAGAGAGAGAGTGGAGGAACTCCTCAAATAATCCAAACCATCAGAGCATCATTGGCTTTCTGGATTAAAGAATAT
ATTAGCTACCAAGTAATTAGAAAACAAGAGGATATTTACATAGAAAAGGCACTAAACAGGCTCCTTCCAAACAAAAATATATGGGTTTTAGGTAACACAA
CTGCCAAGCGACAAGCTATAGTGTCCTTTCTCATATACTCTACTACAAACTCTTCCTCGACTGGCATGATACATGAGTACTGTGATGGAACTGATAACAA
AGACGTCAATGACGAGGTTCTTTATATGTGGAGAGAGACAGGGAAGAGAAGAGGCAAACCTCTTCATGGACCTTTTATAGCAGCACTCCTTAACGATGTA
TTTGGTATTCAAGCTCGAGGTGGCTGTGCTTGTGCTGGACCTTATGGTCACAATCTGCTCCATGTCAATGAGCCTAGCACCCTAGCCATCAGATCTGCCA
TAGAAAAGGGTTATGCTGGAGTGAAGCCAGGATGGACAAGACTTAGCTTCCCCTACTACATGTTCAACGAGGAATTTGAGTTCATTCTTACGGCAATTGA
GTTTTTAGCCATTTACGGCCATCGATTTCTCCCATTGTATCACTTCAACTGGAAAACTGGTAGTTGGACTTTCAAAAAAAGGGAATTTAAAGACCTAGTG
GTTGAAGAAAACAAGGACAATATTAATAAGTTTGAATCATATCTGATAAGGGCTACACAGATTGCAAATCTCCTTCCCAAATTCCCTTCCCAGCGTAAGA
TTCCACAGGACATAAACCCCAACCTCTTGTTCTTCCAGGTCTAG
AA sequence
>Potri.007G108900.1 pacid=42766707 polypeptide=Potri.007G108900.1.p locus=Potri.007G108900 ID=Potri.007G108900.1.v4.1 annot-version=v4.1
MGKELEQSMLRETTPRAQVTTSKDTRTSTVLENNSPSVTTISCSSSSSSISSSIEHLCGSSESFRTLEIGVPKSNSTEKKLAWLRSQIVGDDVEFDSPFG
RRRLTYADHTASGRSLRYIENFIINNVLPFYGNTHTSDSHVGHRTTKMLHEAAEYIKKCLGGGQNDAIMFCGSGTTAAIKRLQEVIGIAVPSTFRERLIK
CLSNEERWVVFVGPYEHHSNLLSWRQSLAEVIEIGLDDNGLIDIEDLRRRLETYRHANRPILGSFSASSNVTGIYSDTRGISQLLHQYGGFACFDFAASG
PYVKINMRSGEVDGYDGIFLSPHKFLGGPGSPGILLMSKALYQLGSSAPSTCGGGTVNYVNGFSEKDTLYLNDIEERESGGTPQIIQTIRASLAFWIKEY
ISYQVIRKQEDIYIEKALNRLLPNKNIWVLGNTTAKRQAIVSFLIYSTTNSSSTGMIHEYCDGTDNKDVNDEVLYMWRETGKRRGKPLHGPFIAALLNDV
FGIQARGGCACAGPYGHNLLHVNEPSTLAIRSAIEKGYAGVKPGWTRLSFPYYMFNEEFEFILTAIEFLAIYGHRFLPLYHFNWKTGSWTFKKREFKDLV
VEENKDNINKFESYLIRATQIANLLPKFPSQRKIPQDINPNLLFFQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G108900
[exp]
0 1
AT2G23440 unknown protein Potri.007G041500
[exp]
17.17 0.7879
Potri.008G031000
[exp]
20.49 0.7341
AT1G16670 Protein kinase superfamily pro... Potri.008G040800
[exp]
33.28 0.7719
AT1G09030 CCAAT NF-YB4 "nuclear factor Y, subunit B4"... Potri.013G019500
[exp]
61.71 0.7522
AT1G18530 EF hand calcium-binding protei... Potri.015G052600
[exp]
64.87 0.7420
AT2G35930 PUB23 plant U-box 23 (.1) Potri.014G101100
[exp]
88.06 0.6500
AT1G62510 Bifunctional inhibitor/lipid-t... Potri.001G158400
[exp]
90.43 0.7391 Pt-HPS.2
AT2G14610 PR-1, PR1, ATPR... pathogenesis-related gene 1 (.... Potri.009G082800
[exp]
105.00 0.7362
AT1G11925 Stigma-specific Stig1 family p... Potri.011G009100
[exp]
121.38 0.7321
AT4G19690 ATIRT1, IRT1 ARABIDOPSIS IRON-REGULATED TRA... Potri.015G117900
[exp]
122.47 0.7327 Pt-ZIP6.4

Potri.007G108900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.