Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64070 1412 / 0 PI-4KBETA1, PI4KBETA1 phosphatidylinositol 4-OH kinase beta1 (.1) AT5G09350 1377 / 0 PI-4KBETA2, PI4KBETA2 phosphatidylinositol 4-OH kinase beta2 (.1) AT1G49340 200 / 7e-52 ATPI4K ALPHA, ATPI4KALPHA Phosphatidylinositol 3- and 4-kinase family protein (.1.2) AT1G51040 186 / 3e-50 Protein kinase superfamily protein (.1) AT1G60490 115 / 5e-26 PI3K, ATVPS34 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) AT1G50030 59 / 3e-08 TOR target of rapamycin (.1.2) AT3G48190 55 / 5e-07 PIG1, ATATM, ATM pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) AT5G40820 45 / 0.0004 ATATR, ATRAD3, ATR ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G059000 [exp] 1804 / 0 AT5G64070 1497 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Potri.009G113700 [exp] 201 / 3e-52 AT1G49340 3062 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.004G152400 [exp] 199 / 1e-51 AT1G49340 2964 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Potri.012G075100 [exp] 123 / 2e-28 AT1G60490 1388 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Potri.001G289200 [exp] 65 / 4e-10 AT1G50030 4080 / 0.0 target of rapamycin (.1.2) Potri.009G084500 [exp] 62 / 3e-09 AT1G50030 4038 / 0.0 target of rapamycin (.1.2) Potri.015G076650 [exp] 54 / 1e-06 AT3G48190 3584 / 0.0 pcd in male gametogenesis 1, ARABIDOPSIS THALIANA ATAXIA-TELANGIECTASIA MUTATED, ataxia-telangiectasia mutated (.1) Potri.004G179000 [exp] 45 / 0.0005 AT5G40820 3459 / 0.0 ARABIDOPSIS THALIANA ATAXIA TELANGIECTASIA-MUTATED AND RAD3-RELATED, Ataxia telangiectasia-mutated and RAD3-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000833 [exp] 783 / 0 AT5G64070 776 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10000272 [exp] 682 / 0 AT5G64070 764 / 0.0 phosphatidylinositol 4-OH kinase beta1 (.1) Lus10002098 [exp] 572 / 0 AT5G49970 731 / 0.0 HOMOLOG OF YEAST PYRIDOXINE AUXOTROPHY 3, pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.1), pyridoxin (pyrodoxamine) 5'-phosphate oxidase (.2) Lus10040481 [exp] 199 / 2e-51 AT1G49340 1556 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10011285 [exp] 189 / 2e-48 AT1G49340 3010 / 0.0 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10030885 [exp] 108 / 1e-23 AT1G60490 1397 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10030605 [exp] 107 / 4e-23 AT1G60490 1325 / 0.0 PHOSPATIDYLINOSITOL 3-KINASE, vacuolar protein sorting 34 (.1) Lus10011315 [exp] 97 / 3e-22 AT1G49340 307 / 9e-96 Phosphatidylinositol 3- and 4-kinase family protein (.1.2) Lus10037246 [exp] 55 / 5e-07 AT1G50030 4101 / 0.0 target of rapamycin (.1.2) Lus10035661 [exp] 55 / 6e-07 AT1G50030 2590 / 0.0 target of rapamycin (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00454 [poplar] [flax] PI3_PI4_kinase Phosphatidylinositol 3- and 4-kinase
Representative CDS sequence Show only first row Show all	>Potri.007G109000.4 pacid=42764862 polypeptide=Potri.007G109000.4.p locus=Potri.007G109000 ID=Potri.007G109000.4.v4.1 annot-version=v4.1 ATGGTGAGGCTATTAGGATTAACTCGCGGAGAATCGGATGATTCTCCGCGAGAGATTACCTCGAGGACGACTCCTTTAACTAGTGAGTCAGGTGAGAGTG GGTGGTTGATTAGGTTCTTTGACTCATCTTTCTTTTGTGAGTGGATTGCAGTTAGTTATCTATACAAGCACGATCATGCCGGGGTTCGGGATTATCTGTG TAATAGAATGTATACATTGCCCTTATCGGGTATTGAGAGTTATTTGTTTCAAATTTGTTATATGATGATACATAAGCCAAGTCCGTCACTTGATAGGTTT GTTATTGATATGTGTTCTAAGTCGTTGTTAATAGCTTTGAAAGTGCATTGGTTTTTGTTGGCGGAGCTTGAGGATTCGGATGATAATGATGGGATTAGTA GGATTCAGGAGAAGTGTCAGATTGCTGCCACTTTGATGGGAGAGTGGCCGCCATTGTTGAGGCCACGGAATGAGTCTTCGAGTCCTGGGAGTAAGAATCA GGTTTTGAATAGAATCTTGTCATCAAAACAGAAGTTGTTGTCATTGACTTCTTCTCCACCTCTACAGAAGTCTACGCAATTATCGGGGAATAGTTTGCAG GAGGATGGGACTGGGAGTCAGTTGTCACCGGATGAGAATAAGATTTTTAAGAAGTTTATTCCTGGTCCAAAGTTTAGAGATGCTTTGTTGTTTAGGAAGT CAGTTGATAAAGATGATACAAAGGCTAGAGATGCTTTATTGTTTAGGAAGTCAGTTGATAAAGATGATACTAAGGCTAGAGATGCTTTGTTGTTTAGGAA ATCAGTTGATAAAGATGAGGATGAGGGTGGAAAGGATGGATTTTTCAAGAGACTTTTGAGGGATAGTAGTAGACGCGAGGATGAGGAGTTGACAACAAGT TCAGATGGTTTTTTCAAGAGGCTTAGAGATAGCATTAAAAGCGAGGATGAGGAGTTGACGTCCAGCTCAGATGGGTTTTTCAAGAGGCTTCTCAGGGACA ATAGTAGAGTCGAGGATGAGGAAGTAATGTCAAGCTCCGATGGCTTTTTCAAGAAACTGTTTCGTGATAGTAAGAGTGATGGTGATGAAAAGCTGGTTTC TAAATCTGCTGAAGACGATGAAAAAGAGGGGTTCCTTAAGAGGTTTTTTAAGGAGAAGTTTGAAGACAAGAAAGATGGAAATGATCAGAACGAGGATGAA GAAAGGTTGAAGCTTGAAGAGAAAGGTTCAAAATCTGCAGAGGATGATGAAAAAGAGGGGTTCTTCTGGAAGTTGTTCAAGGATAAGTTTGAGGACAAGA AAGATGGGGCTGATAAACCTGATGAGGGGACTGTCAATGGTGAGGAAGAAGAACCTTCTGACTTTTCTTTGTTTCGAAGACTGTTTCGTGTGCATCCTGA AGAGGTCCAAAGTTCTCCTGTGAATGAAAATAACAGTAGTGGTAGCTTGCTTGAAAGCAGCCTGGGTACTGAGAATTTTTTTCGCAAATTGTTTAGAGAT CGTGAGCGCTCATTTGAAGACTCTGAGTTATTTAGTTTTAAGAAGAACAATGAGAAGCATCCTGGATCACCTAAGCAACAGAATGAGAAATCAAACACAA AGCCCCCACTTTCAAATACTGCAGCACTGTTCCGGAAAGGGGCTTATCATGAGTCATTGGACTTTGTGATGACATTATGTGAAACTTCGTATGGTTTGGT GGATGTATTTCCTGTTGAAGATCGTAAAAGTGCTCTTTGTGAGTCACTTGCAGAGATCAACATGCATTTAGCTGAGGCTCAAAACAGTGGAGGGGTTTGC TTTCCAATGGGAAAGGGGATGTATCGCATTGTTCATATACCCGAAGATGAAGCTGTTCTCTTGAATTCGAGGGAAAAGGCACCTTATCTGATTTGTGTTG AAGTATTGAAAAGTGAAATGCCAAGTAATAGCAAGGAGACATCTGGTACTCAAAAGCTTTCCAGAGGAGGAATTCCTCTAGCAAATGGCGATGCATTCTT GCAGAAGCCACCTCCTTGGGCTTATCCTTTGTGGACTGCCCAGGAAGTTTATCGGAATAGTAGTGATAGGATGTCTCGATCAACCGCTGAGGCGATTGAC CAGGCAATGTCCCATTCATCAGAAATGAAAATGAAATTTGTTAGTGTGAGTCTTTCAGTGGAGAAGCAATTCCCTAGCCAGTCAACTATCATTGAAGCAC CTAAATTGAATTCTGGCATCAATTGTATGCATCAAAATGCTTCACATTGTAATGATTTGGAATGGGTAAGGGTAGTGTTGACAGCAGATCCTGGAGTTAG AATGGAAGACACAGGGTATGCAGGGGCACCACGACGCAAGGAGCATCGTCGGGTTCCTAGTACAATTGCCATGGAAGAAGTAAAGGCTGCTGCAGCCAAA GGGGAAGCACCTCCTGGACTCCCTCTGAAAGGGGCTGGTCAAGATTCCTCGGATGCACACCCAAAGGTTGATGGCAATCCCAAGGCCAGTGATGCCTTAT CTGGTGAACTCTGGGAGGTCAAGAAAGAGAGAATACGCAAAGCTTCATTATATGGGAAATTACCTGGTTGGGACCTGCGCTCTGTTATTGTGAAGAGTGG TGATGATTGTAGGCAGGAGCATCTTGCTGTGCAACTCATTTCTCACTTTTATGATATATTTCAAGAAGCTGGTCTCCCTCTTTGGTTGCGTCCCTATGAA GTTCTATGTACTTCATCTTACACAGCTCTCATTGAAACAATTCCAGATACGGCATCAATCCATTCTATTAAGAGCAGATATCCAAATGTCACGAGTTTGC GTGACTTTTTTGTTGCCAAGTATGGAGAGAACTCCCCAAGTTTTAAGCTTGCACAGAGGAACTTTGTTGAAAGCATGGCTGGATATTCTCTTGTGTGCTA CCTTTTACAGGTGAAGGACAGGCACAATGGGAACTTGTTAATGGATGAAGATGGCCACATTATACACATTGATTTTGGCTTCATGCTCTCTAACTCTCCT GGTGGTGTAAATTTTGAAAGCGCACCTTTCAAACTAACCCGGGAACTTCTTGAGGTCATGGATTCTGACGCTGAGGGAATTCCAAGCGAGTTCTTTGACT ATTTTAAGGTTTTATGTATTCAAGGCTTCTTGACATGTCGTAAGCATGCAGAGCGTATTATTCTCCTTGTTGAGATGTTGCAGGATTCTGGTTTCCCTTG CTTTAAAGGTGGTCCACGGACAATACAGAACCTAAGAAAGCGATACCATCTAAGTTTGACAGAAGAGCAATGCGTGTCCTTGGTGCTCTCTCTGATCAGC AGCAGCTTAGATGCATGGCGGACACGGCAGTACGATTATTATCAAAGGGTTTTAAATGGAATATTGTGA
AA sequence Show only first row Show all	>Potri.007G109000.4 pacid=42764862 polypeptide=Potri.007G109000.4.p locus=Potri.007G109000 ID=Potri.007G109000.4.v4.1 annot-version=v4.1 MVRLLGLTRGESDDSPREITSRTTPLTSESGESGWLIRFFDSSFFCEWIAVSYLYKHDHAGVRDYLCNRMYTLPLSGIESYLFQICYMMIHKPSPSLDRF VIDMCSKSLLIALKVHWFLLAELEDSDDNDGISRIQEKCQIAATLMGEWPPLLRPRNESSSPGSKNQVLNRILSSKQKLLSLTSSPPLQKSTQLSGNSLQ EDGTGSQLSPDENKIFKKFIPGPKFRDALLFRKSVDKDDTKARDALLFRKSVDKDDTKARDALLFRKSVDKDEDEGGKDGFFKRLLRDSSRREDEELTTS SDGFFKRLRDSIKSEDEELTSSSDGFFKRLLRDNSRVEDEEVMSSSDGFFKKLFRDSKSDGDEKLVSKSAEDDEKEGFLKRFFKEKFEDKKDGNDQNEDE ERLKLEEKGSKSAEDDEKEGFFWKLFKDKFEDKKDGADKPDEGTVNGEEEEPSDFSLFRRLFRVHPEEVQSSPVNENNSSGSLLESSLGTENFFRKLFRD RERSFEDSELFSFKKNNEKHPGSPKQQNEKSNTKPPLSNTAALFRKGAYHESLDFVMTLCETSYGLVDVFPVEDRKSALCESLAEINMHLAEAQNSGGVC FPMGKGMYRIVHIPEDEAVLLNSREKAPYLICVEVLKSEMPSNSKETSGTQKLSRGGIPLANGDAFLQKPPPWAYPLWTAQEVYRNSSDRMSRSTAEAID QAMSHSSEMKMKFVSVSLSVEKQFPSQSTIIEAPKLNSGINCMHQNASHCNDLEWVRVVLTADPGVRMEDTGYAGAPRRKEHRRVPSTIAMEEVKAAAAK GEAPPGLPLKGAGQDSSDAHPKVDGNPKASDALSGELWEVKKERIRKASLYGKLPGWDLRSVIVKSGDDCRQEHLAVQLISHFYDIFQEAGLPLWLRPYE VLCTSSYTALIETIPDTASIHSIKSRYPNVTSLRDFFVAKYGENSPSFKLAQRNFVESMAGYSLVCYLLQVKDRHNGNLLMDEDGHIIHIDFGFMLSNSP GGVNFESAPFKLTRELLEVMDSDAEGIPSEFFDYFKVLCIQGFLTCRKHAERIILLVEMLQDSGFPCFKGGPRTIQNLRKRYHLSLTEEQCVSLVLSLIS SSLDAWRTRQYDYYQRVLNGIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.007G109000 [exp]	0	1
AT4G31570			unknown protein		Potri.018G008600 [exp]	2.64	0.8465
AT3G47700		MAG2	maigo2, RINT-1 / TIP-1 family ...		Potri.015G063100 [exp]	6.16	0.7574
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.007G093800 [exp]	8.66	0.7749
AT1G65430		ATARI8, ARI8	ARABIDOPSIS ARIADNE 8, ARIADNE...		Potri.008G077100 [exp]	13.74	0.7685
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006000 [exp]	15.87	0.8270
AT4G38200			SEC7-like guanine nucleotide e...		Potri.004G208400 [exp]	17.23	0.8369
AT1G22060			unknown protein		Potri.008G029800 [exp]	18.11	0.8421
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Potri.016G138000 [exp]	21.54	0.7732
AT4G27430		CIP7	COP1-interacting protein 7 (.1...		Potri.001G403700 [exp]	21.77	0.8051	Pt-CIP7.2
AT1G24560			unknown protein		Potri.010G049400 [exp]	25.61	0.7303

Compare expression of checked genes

Potri.007G109000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.