Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09330 265 / 7e-84 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT5G64060 258 / 9e-83 NAC ANAC103 NAC domain containing protein 103 (.1) AT3G10500 234 / 2e-71 NAC ANAC053 NAC domain containing protein 53 (.1) AT5G04410 233 / 1e-70 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10480 203 / 1e-60 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 197 / 1e-60 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT3G17730 185 / 5e-56 NAC ANAC057 NAC domain containing protein 57 (.1) AT1G65910 194 / 1e-55 NAC ANAC028 NAC domain containing protein 28 (.1) AT1G34180 192 / 2e-55 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT1G34190 191 / 6e-55 NAC ANAC017 NAC domain containing protein 17 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058900 [exp] 560 / 0 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.008G031800 [exp] 239 / 5e-73 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229900 [exp] 235 / 1e-71 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229700 [exp] 202 / 3e-60 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.015G030200 [exp] 186 / 3e-56 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.002G061300 [exp] 194 / 1e-55 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.017G139500 [exp] 193 / 7e-55 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.005G200100 [exp] 187 / 2e-53 AT1G34190 447 / 2e-151 NAC domain containing protein 17 (.1) Potri.004G081000 [exp] 188 / 4e-53 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020896 [exp] 298 / 1e-97 AT5G09330 276 / 2e-88 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Lus10028824 [exp] 222 / 1e-66 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10037939 [exp] 203 / 7e-61 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10023537 [exp] 196 / 4e-58 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10017458 [exp] 198 / 1e-57 AT5G04410 379 / 8e-126 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10038670 [exp] 201 / 3e-56 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10026373 [exp] 187 / 7e-56 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10042284 [exp] 187 / 7e-56 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10028713 [exp] 193 / 1e-55 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10007377 [exp] 188 / 4e-53 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.007G109100.1 pacid=42765356 polypeptide=Potri.007G109100.1.p locus=Potri.007G109100 ID=Potri.007G109100.1.v4.1 annot-version=v4.1 ATGGGGAGAAATAGTTCATTGCCTCCTGGCTTTAGGTTCCATCCAACTGATGTGGAACTGGTAAAATACTATCTGAAAAGAAAAGTGCTGGGGAAGAAAT TTCATTTTCAAGCAATTGCAGAGATTGAGATTAACAAATATGCCCCGTGGGATCTTCCCAATAAATCTTGTTTGAGAACTAGGGATCTGAAATGGTACTT CTTTTGCCCTACAGAAAAGAAGTATGCAAGTGGGGTAAGAAAGAAGCGTGCCACTGATATTGGTTATTGGAAAACCACTGGCAAAGACAGATCTGTTCAG TACAAAAATGAAGTTGTCGGGATGATAAAAACTTTGGTTTTTCATATTGGCAAGCCACCTAGAGGGGAGCGAACAGACTGGGTTATGTATGAATATAGAC TTGAAGAAAAAGAGTTGGCTGACAAAGGAATTGCTCAAGATGAGTACGTCCTCTGTCAGATATTCAAGAAGGATGGACCTGGTCCAAAAAATGGTGCGCA GTATGGAGCACCATTTAATGAGGATGAATGGGATGATGGTGATGATGAGGTGGAGAAGGAAGTGAATGCCCAGCCAGCTATTTTACCTGCTCTCATGGAT GCACCTGCATTTATGCTGCCAAACAATCCAAACATGACCATCGCTACAAGCTCATGCGTGCCAGAGAGCATGTGCACTGGACCGCTTATATCATGCCCTT CCCAAGCCCCATCAACAGCTTGCACTACCCTTCCTAGGGTTTCTAATGATGATGTTGCTTCTACAAAAGCTCTTCAGTTTGTGCATGGGGGTGTGAATGG TGGTGAAGCTGATTCTTTTGCTGGCATGTCAGCACCAGCTTTTCAACAACCATGTAACCCCAACAGTTCCATCCTTGCTAGCTCTAGCTCATATGTACCA GAAAATACGTGCTCTGCTTACATTCCTAGCGTGGGTGCTACTCAAGTGGAAGCTCCTCAAATTGTGGATGACAATGATGATATCCTTTCAATGCTGGCTG TCTTCTACAATGACAATCCTGAGAGTGCGGACTTTGGTGGGATTGCAAAGCCAGAGACTGATATATTTCAGAACTTGGGAGACCTTCCCACCCTGGAAGG TGGTGGGGATAGTATCCCCATCTCACAATATTTCATGGATCCAACGCTTCCAGGCAGTGCGGACTTTGGTGGGATTGCAAAGCCAGGGACTGATATATTT CAGAACTTGGGAGACCTTCCCACCCTGGAAGGTGGTGCGGACTTTTTGGAGCTGATGGATCTAGAGACCCCGCTCTATCATAGTTGGGGGAAATAA
AA sequence Show only first row Show all	>Potri.007G109100.1 pacid=42765356 polypeptide=Potri.007G109100.1.p locus=Potri.007G109100 ID=Potri.007G109100.1.v4.1 annot-version=v4.1 MGRNSSLPPGFRFHPTDVELVKYYLKRKVLGKKFHFQAIAEIEINKYAPWDLPNKSCLRTRDLKWYFFCPTEKKYASGVRKKRATDIGYWKTTGKDRSVQ YKNEVVGMIKTLVFHIGKPPRGERTDWVMYEYRLEEKELADKGIAQDEYVLCQIFKKDGPGPKNGAQYGAPFNEDEWDDGDDEVEKEVNAQPAILPALMD APAFMLPNNPNMTIATSSCVPESMCTGPLISCPSQAPSTACTTLPRVSNDDVASTKALQFVHGGVNGGEADSFAGMSAPAFQQPCNPNSSILASSSSYVP ENTCSAYIPSVGATQVEAPQIVDDNDDILSMLAVFYNDNPESADFGGIAKPETDIFQNLGDLPTLEGGGDSIPISQYFMDPTLPGSADFGGIAKPGTDIF QNLGDLPTLEGGADFLELMDLETPLYHSWGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09330	NAC	VNI1, ANAC082	VND-interacting 1, NAC domain ...		Potri.007G109100 [exp]	0	1
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	5.29	0.9013
AT2G24360			Protein kinase superfamily pro...		Potri.006G279900 [exp]	5.47	0.8897
AT5G46410		SSP4	SCP1-like small phosphatase 4 ...		Potri.001G353700 [exp]	7.54	0.8950
AT3G19910			RING/U-box superfamily protein...		Potri.007G073200 [exp]	8.48	0.8706
AT5G10490		MSL2	MSCS-like 2 (.1.2.3)		Potri.007G011100 [exp]	9.79	0.8922
AT1G11050			Protein kinase superfamily pro...		Potri.017G133000 [exp]	10.67	0.8957
AT5G48655			RING/U-box superfamily protein...		Potri.003G148300 [exp]	11.74	0.8881
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.006G033201 [exp]	11.83	0.8735
AT5G41350			RING/U-box superfamily protein...		Potri.003G129900 [exp]	12.48	0.8820
AT1G72690			unknown protein		Potri.017G119600 [exp]	13.19	0.8667

Compare expression of checked genes

Potri.007G109100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.