Plant FIBer expression Database

Potri.007G109200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33467 55 / 5e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G058800
[exp]
112 / 1e-33 AT4G33467 59 / 9e-13 unknown protein
Potri.001G188400
[exp]
42 / 4e-06 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G109200.1 pacid=42765561 polypeptide=Potri.007G109200.1.p locus=Potri.007G109200 ID=Potri.007G109200.1.v4.1 annot-version=v4.1
ATGATGGAAGGTGATACAACTATGGCGGCGAGGATTGATAGAAAAACGTCAATAGAATTTGAGCCAAGGACTCTAAGAATGGAGCAAATCCAATTTGCCA
GGGAAGCAGCTCTATATGTGTTGAATACGAGCAGCATAGAAGCTGCTTTGAGTATATTTACAGAGGGTGTGGAGCCGGTGGTGGGTGTGGCAAGACGAAA
TGGAGACGCCATTAATGGGATGGAAATGAGTAAAGAAAAGCAGTATTTGGAAAATGAAGATGAAGATGAAGATGAAGACCTGCAGCTGCCTGGGATAAGA
GATATAGCATCTGCTCCTTTTTAA
AA sequence
>Potri.007G109200.1 pacid=42765561 polypeptide=Potri.007G109200.1.p locus=Potri.007G109200 ID=Potri.007G109200.1.v4.1 annot-version=v4.1
MMEGDTTMAARIDRKTSIEFEPRTLRMEQIQFAREAALYVLNTSSIEAALSIFTEGVEPVVGVARRNGDAINGMEMSKEKQYLENEDEDEDEDLQLPGIR
DIASAPF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G33467 unknown protein Potri.007G109200
[exp]
0 1
AT2G38905 Low temperature and salt respo... Potri.010G217200
[exp]
2.00 0.9215
AT1G11925 Stigma-specific Stig1 family p... Potri.004G007100
[exp]
4.00 0.9047
AT2G38870 Serine protease inhibitor, pot... Potri.002G042300
[exp]
5.74 0.8943
AT3G02645 Plant protein of unknown funct... Potri.001G205100
[exp]
6.32 0.8873
AT1G17180 ATGSTU25 glutathione S-transferase TAU ... Potri.019G130433
[exp]
6.48 0.8536
AT1G78340 ATGSTU22 glutathione S-transferase TAU ... Potri.019G130566
[exp]
6.92 0.8538
AT4G17030 ATHEXPBETA3.1, ... expansin-like B1 (.1) Potri.003G083200
[exp]
17.60 0.8766 PtrEXLB1,EXLB1.1
AT4G39720 VQ motif-containing protein (.... Potri.001G158800
[exp]
20.14 0.8242
AT1G67850 Protein of unknown function (D... Potri.008G185600
[exp]
21.90 0.7943
AT5G66440 unknown protein Potri.005G229800
[exp]
23.68 0.8264

Potri.007G109200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.