Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G13690 518 / 3e-180 PRLI-interacting factor, putative (.1) AT5G60050 236 / 3e-71 BTB/POZ domain-containing protein (.1) AT1G63850 232 / 4e-69 BTB/POZ domain-containing protein (.1) AT3G50780 196 / 7e-56 unknown protein AT3G19920 52 / 8e-07 unknown protein AT4G10800 48 / 8e-06 unknown protein AT3G05675 47 / 3e-05 BTB/POZ domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058700 [exp] 892 / 0 AT2G13690 526 / 0.0 PRLI-interacting factor, putative (.1) Potri.001G100900 [exp] 253 / 3e-76 AT1G63850 696 / 0.0 BTB/POZ domain-containing protein (.1) Potri.001G233900 [exp] 235 / 9e-71 AT5G60050 533 / 0.0 BTB/POZ domain-containing protein (.1) Potri.003G131000 [exp] 235 / 2e-69 AT1G63850 653 / 0.0 BTB/POZ domain-containing protein (.1) Potri.007G032800 [exp] 223 / 6e-66 AT3G50780 654 / 0.0 unknown protein Potri.005G129700 [exp] 223 / 6e-66 AT3G50780 623 / 0.0 unknown protein Potri.004G154600 [exp] 70 / 1e-12 AT1G63850 96 / 6e-21 BTB/POZ domain-containing protein (.1) Potri.006G202900 [exp] 59 / 6e-09 AT3G05675 532 / 0.0 BTB/POZ domain-containing protein (.1.2) Potri.001G086100 [exp] 52 / 5e-07 AT3G05675 348 / 9e-117 BTB/POZ domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020892 [exp] 544 / 0 AT2G13690 479 / 3e-164 PRLI-interacting factor, putative (.1) Lus10033484 [exp] 542 / 0 AT2G13690 478 / 7e-164 PRLI-interacting factor, putative (.1) Lus10017511 [exp] 261 / 3e-79 AT1G63850 706 / 0.0 BTB/POZ domain-containing protein (.1) Lus10024658 [exp] 259 / 7e-79 AT1G63850 672 / 0.0 BTB/POZ domain-containing protein (.1) Lus10028772 [exp] 244 / 7e-73 AT1G63850 707 / 0.0 BTB/POZ domain-containing protein (.1) Lus10038475 [exp] 229 / 5e-68 AT5G60050 518 / 0.0 BTB/POZ domain-containing protein (.1) Lus10023336 [exp] 221 / 2e-65 AT5G60050 532 / 0.0 BTB/POZ domain-containing protein (.1) Lus10022484 [exp] 216 / 1e-63 AT3G50780 602 / 0.0 unknown protein Lus10016789 [exp] 180 / 8e-52 AT3G50780 408 / 1e-140 unknown protein Lus10023573 [exp] 84 / 8e-17 AT1G63850 87 / 8e-18 BTB/POZ domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G109300.1 pacid=42766136 polypeptide=Potri.007G109300.1.p locus=Potri.007G109300 ID=Potri.007G109300.1.v4.1 annot-version=v4.1 ATGGCCGAGTCGACTCACAAAAGGCATAGTTCAACCTATCAGTGTCGCCGCGGGCGATCTTCGTGGTGCTGTTCCTTTGCTGTACCACCCAGTTTCCAGA AGAACAAGAAACCCGACTACTCGGTCTCTAAGCTTGGTCCCCGCTCATTCCCCAACTCACCCAAGCCCGGGTTAAATTTCGTGGGTCGGATAGACCCGAG AAGAATCCTCTCCCCAGGCCGCGTCTCGCCTATTGACTCGGATCCTACTGGCGACACGACCCGAGACATCATACCCGACCCGTCGCCGCCGGTGGACTTG AACTCGAAATCGAGATCTGAGTCTTTCCGGGGGAGGAATGAGAGGAGGTCGTTTTCGGATTCTGGATCGGGTTCCGGGTTGGATTCGGGTCGGGGCGTGT TTGACGTGAGGCTGAAATTGAGAGGGAAGAATGGTGGGGGTTTGGTGTTGGAGCTGAATTCGGAAGTCTTGATTGCAAATTCAGAAGTTTTTGCGGGGTT GATATGCGAATATCGGAAAAACCTGGGGTCGAAATGTGACGGTGATGGTGGTGGTAATTTGTCAAGAAAAATGTGTAGAATAGAAGTGCCTGATGTGGAG AATTTGGGAATTTTTAGGGAGACAATTGAGTTGATGTTTGAAGAGGATATTGCTAAAAGGTTATTGAAGGTTGGGGCTTATAGAGCCATAGATATACTTG AGGTATCAGCTGGCATCATGTTTACTAAAGGTGTTTTATCCTGCCTGAAATACCTTGAGGCTATCCCTTGGACGGAGGAAGAAGAGGACAGACTTAGGAA TCTATTTGCAGTGTTTAAATTTGATGAGACAACAACTCAAGACATTTTGGCTAGACTCCACTTGCTTAGCTCAGAAGATTCTAAACAAAATCTAGCTAGA CAGCTAGTTTGGTCTATTACTGCTTGTGCTGATGCCAATGCAAGAAATGAATTGAAGTCATTAGTTAAGGGTCTCCTTTGCAAAAGTTCAGTGTACGAGA AGGATCAACACGATCCCAACAAGGAAGATCTTTATGATGTTTGTCAGTCCTGTCTAGGTTCATTAGTCAACCTCATGGAGGAAGCCTCTGGTATCATATC CCCTGGGAAAGTGGTGAAAAAAGAAACAAGTAAGCCTTTGATTGGACGCATCTCCAGACAGGTTGACAACATCAATTGGCTACTGGAAATTCTCTTTGAT CAACAGATTGGTGAGGAATTTGTGGATATGTGGGCACATCAAGGAGAGTTGCTTAGCATGCATGGGAGTGTATCTCCGATGGTTAGATATGAGCTCAGCC GGGTTTCTGCAATTTTATTTATTGCAATGGGAACCAGAAAATTGCATTGCCGCTCAGAAGCAAGAGCAGCGCTTCTCCAGGCATGGTTTGGGCCAATGCT TTTGGACTTCGGTTGGTTACAGAGATGTAAAAAGGGACTGGACATGAAAGCATTAGAAGAAGCCATGGGTCAGACACTCCTTACACTTCCTTTGAAGCAG CAGGATGTGCTGTTCACTGAATGGTTTAGGTATTTCTCCAAGCATGGCACCGAATGTCCCAATCTTTGCAAAGCCTTCCAGATTTGGTGGCGTCGATCAT TTCCGAGAGGCTCAGAAACTCATGCAATTGAATCCAGGTAA
AA sequence Show only first row Show all	>Potri.007G109300.1 pacid=42766136 polypeptide=Potri.007G109300.1.p locus=Potri.007G109300 ID=Potri.007G109300.1.v4.1 annot-version=v4.1 MAESTHKRHSSTYQCRRGRSSWCCSFAVPPSFQKNKKPDYSVSKLGPRSFPNSPKPGLNFVGRIDPRRILSPGRVSPIDSDPTGDTTRDIIPDPSPPVDL NSKSRSESFRGRNERRSFSDSGSGSGLDSGRGVFDVRLKLRGKNGGGLVLELNSEVLIANSEVFAGLICEYRKNLGSKCDGDGGGNLSRKMCRIEVPDVE NLGIFRETIELMFEEDIAKRLLKVGAYRAIDILEVSAGIMFTKGVLSCLKYLEAIPWTEEEEDRLRNLFAVFKFDETTTQDILARLHLLSSEDSKQNLAR QLVWSITACADANARNELKSLVKGLLCKSSVYEKDQHDPNKEDLYDVCQSCLGSLVNLMEEASGIISPGKVVKKETSKPLIGRISRQVDNINWLLEILFD QQIGEEFVDMWAHQGELLSMHGSVSPMVRYELSRVSAILFIAMGTRKLHCRSEARAALLQAWFGPMLLDFGWLQRCKKGLDMKALEEAMGQTLLTLPLKQ QDVLFTEWFRYFSKHGTECPNLCKAFQIWWRRSFPRGSETHAIESR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G13690			PRLI-interacting factor, putat...		Potri.007G109300 [exp]	0	1
					Potri.001G035450 [exp]	2.82	0.9243
AT3G07310			Protein of unknown function (D...		Potri.002G247700 [exp]	4.69	0.9026
AT5G64380			Inositol monophosphatase famil...		Potri.017G042900 [exp]	5.29	0.9243
AT2G42760			unknown protein		Potri.011G069900 [exp]	7.54	0.9177
AT4G19110			Protein kinase superfamily pro...		Potri.001G035400 [exp]	9.21	0.9147
AT2G13690			PRLI-interacting factor, putat...		Potri.005G058700 [exp]	10.67	0.8966
AT2G15890		MEE14	maternal effect embryo arrest ...		Potri.009G108200 [exp]	13.22	0.8849
					Potri.019G045600 [exp]	16.30	0.9075
AT4G10270			Wound-responsive family protei...		Potri.019G116700 [exp]	17.54	0.8986
AT1G68810	bHLH	bHLH030	basic helix-loop-helix (bHLH) ...		Potri.019G089000 [exp]	18.00	0.8764

Compare expression of checked genes

Potri.007G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.