Plant FIBer expression Database

Potri.007G109400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G43850 547 / 0 SEU SEUSS transcriptional co-regulator (.1.2)
AT5G62090 308 / 3e-92 SLK2 SEUSS-like 2 (.1.2)
AT4G25515 294 / 4e-88 SLK3 SEUSS-like 3 (.1)
AT4G25520 291 / 1e-86 SLK1 SEUSS-like 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G072900
[exp]
684 / 0 AT1G43850 569 / 0.0 SEUSS transcriptional co-regulator (.1.2)
Potri.005G186900
[exp]
571 / 0 AT1G43850 612 / 0.0 SEUSS transcriptional co-regulator (.1.2)
Potri.005G058501
[exp]
533 / 0 AT1G43850 158 / 2e-41 SEUSS transcriptional co-regulator (.1.2)
Potri.012G136100
[exp]
331 / 5e-100 AT5G62090 536 / 1e-178 SEUSS-like 2 (.1.2)
Potri.015G138500
[exp]
328 / 4e-99 AT5G62090 551 / 0.0 SEUSS-like 2 (.1.2)
Potri.003G121800
[exp]
272 / 1e-79 AT5G62090 357 / 1e-111 SEUSS-like 2 (.1.2)
Potri.013G089900
[exp]
153 / 9e-43 AT1G43850 172 / 6e-50 SEUSS transcriptional co-regulator (.1.2)
Potri.001G355900
[exp]
46 / 3e-06 AT1G43850 49 / 3e-08 SEUSS transcriptional co-regulator (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10042785
[exp]
629 / 0 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2)
Lus10029756
[exp]
624 / 0 AT1G43850 721 / 0.0 SEUSS transcriptional co-regulator (.1.2)
Lus10028635
[exp]
464 / 3e-153 AT1G43850 518 / 5e-174 SEUSS transcriptional co-regulator (.1.2)
Lus10018933
[exp]
399 / 1e-129 AT1G43850 435 / 1e-143 SEUSS transcriptional co-regulator (.1.2)
Lus10038880
[exp]
325 / 7e-98 AT5G62090 557 / 0.0 SEUSS-like 2 (.1.2)
Lus10006324
[exp]
223 / 3e-63 AT5G62090 277 / 9e-84 SEUSS-like 2 (.1.2)
Lus10015002
[exp]
224 / 8e-62 AT5G62090 439 / 3e-143 SEUSS-like 2 (.1.2)
Lus10029594
[exp]
111 / 4e-25 AT1G43850 140 / 9e-35 SEUSS transcriptional co-regulator (.1.2)
Lus10029753
[exp]
54 / 4e-09 AT1G43850 42 / 9e-06 SEUSS transcriptional co-regulator (.1.2)
Lus10000198
[exp]
0 / 1 AT5G62090 174 / 8e-48 SEUSS-like 2 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01803 LIM_bind LIM-domain binding protein
Representative CDS sequence
>Potri.007G109400.3 pacid=42766203 polypeptide=Potri.007G109400.3.p locus=Potri.007G109400 ID=Potri.007G109400.3.v4.1 annot-version=v4.1
ATGATACCAAGTAGGCCACAGACTCCAATCGGTGGTTCCCAGTCTGTTTCACCTGTGCTTTTGAGATCAAATTCTGCCATTTTGGGGTCTCAAGGAGATG
GTTCCATGCAGCCAGGTCAGTATAACATGAATTTGGTTGGAAATTCTCCCAGTGCGTCTTCTCTTATCAATCAGGGTTTTGGGAAAGGTGTTTCAAGCTC
TGGACTTTCTGGTTTAGAGTCTACTATTATTTCTATGGTAGCTAATGATGTGGGTTTCAGCTCATTGTTTGATGGTTCCAATATGGTGAGTTCTGCTTCA
TCTGGAAAAGTTCAAAGCAAGCAAATTTCTAACCCTTCTGTTAATCACCAACCTCAAGTTCAACAATTTGAGCCACACATGATAAAACATGGGCAAAATC
AATTCCAGTCCATTCGAGGCGGGTTGGGCGCCATGGGACCTGTAAAATTGGAGCCACATGTAATAAATGACCAGATTGCCCCCCATCGTAGGTTGCAGTC
TTTGCAGAGTCTGGGTTCAGTGAAAGTAGAACCACAACAGAACCGGATTGGAACAGGCATTGGACCTGTTAAAGTGGAGAATCAACTTTCTGTTCAATCG
GTTTTACAGCAGCAGCAGCAGTTCTTCCAGATGTCCAGGCAGTCTCCTCAGGCTGCTGTCGCACAGATGAATTACTTACAGCAACAGCAAATTCTGCAGT
TGCAACAACAGCAGCAACTTTTGAGGGCATTTCCTCATCAACAGCCCCAAATACAACAGTTTCAACAGCAAAATTTGCCAGTTAGATCTGTTGCAAGACC
ACCGTATGAACCGGGAACAGGTGCTAGGCGATTGACTCAATACATTTATCAGCAGCGGCATAGACCTCAGGAAAACAATATTGAATTCTGGAGGAAATTT
GTGGCTGAGTTTTTTGCTTCCAATGCAAGGAAAAGGTTATGTGTTTCATTGTATGGAAATAGCCGCCAAACAAATGGTGTTTTTCCTCAGGATTTGTGGC
ACTGTGAGATATGCAATTGCAAACCTGGTCGTGGTTTCGAAACTACTGTAGAGGTTCTTCCTAGGTTGTTCAAAATCAAATATGATAGTGGCACTTTGGA
AGAGCTTCTTTATGTCGATATGCCTCGTGAATATCAGAATGCAAGTGGTCAAATTGTACTTGACTATGCAAAAGCAATACAAGAGAGTGTTTTTGAGCAC
CTTCGTGTTGTACGCAATGGCCAACTTCGTATCATTTTCTCTCCAGATCTGAAGATTTGCTCTTGGGAGTTTTGTGCATGCCGTCATGAGGAACTTATTC
CACGAAGGTTGATTATACCTCAGGTAAGCCAGCTTGGAGTTGTGGCACAGAAATACCAAGCTTCTGCTCAAAATGCTTCATCGAGCTCTTCTTCACCTGA
TTTAGAAAATAACTGTAACATGTTTCTTGCATCTGCTTGTCAACTAGCAAAAGCCTTGGAGATACCTTTAGTTAATGATTTAGGATTCACAAAAAGATAT
GTGCGATGTCTCCAGATATCAGAGGTGGTAAACTGCATGAAAGACTTGATTGACTATACAACTCAAGATGCTGGGAAGGGACCAATAGAGAGTTTGGCCC
AGTTCCCTCGCAAAACCAGGCCATTTTCTGGAGTGCATGATTCCGATCAACAACCACCTGAGAAAAAGCAGTGTCAAATTACTGGACACACATCGAATTA
TGATCATCATACTGTACGGGCAAGCATCATGCATCCTTCCACAAGCAGTGGTGTTGCAAGTGCAAACAATTCCCTCGGCACAAGCTCCACCACTTCCTCT
GCCATCACTGTTGGCGGGCTTCTTCACCAGAATTCCATGAATTCACGAATTGAAAATCAGATGACTAGTCCTGGCAGTCCATATACTGGGACTTCTGTTC
AGATTCCATCTGCTGGTTCTTCAACCACTTGGCCACCAGCTCAGCCCAACCCCTCTTCTCCCTTCTCTTGTCTGACACCATCATCATCTGGCAATCCTTC
TCAAAGTTCCCACAATACTTTAGCAGCATCAACTGCTATAAACCATGTCTGTTCAGCAAACTCACCTGTTCAGACACCAATGCAACAGTCATCTCAGTCC
AATGAGGTTGATCCAAATGAATTTCAGAGCTCTGTTGAGAAAATCATGCAAGAAATGATCTCTTCACGGTTCAGTGGGACAGGTGGTATGGTCAGTGTTG
ATTATGAAGGAAATAATATGGACATAAATAGGGTCACAGAGTCGAGAAAAAATGTGCTCACCAATTTCCCTTACGTAGAGGGTAATGTGATGAGAAACAA
GTCAATTAATGTTGGTGGTGGATTTGGGAATTTGAATGGTAAAAATCATCTTTCTGCTTCTACCAGCGGAATCACAGCTGAAATGGGGAATGTCTCCGGC
ACTTTGTCTGGTAGGTTTGCTATGCCAGTGATGGATCATGATACTGGTATGAATCATCAGCAACAGGAACTGGCTTATCAGCTGCACAACAGTATTGGAG
CAGTATATAGATATCTTGATCCCCAATTTGATTGGACTACCTGA
AA sequence
>Potri.007G109400.3 pacid=42766203 polypeptide=Potri.007G109400.3.p locus=Potri.007G109400 ID=Potri.007G109400.3.v4.1 annot-version=v4.1
MIPSRPQTPIGGSQSVSPVLLRSNSAILGSQGDGSMQPGQYNMNLVGNSPSASSLINQGFGKGVSSSGLSGLESTIISMVANDVGFSSLFDGSNMVSSAS
SGKVQSKQISNPSVNHQPQVQQFEPHMIKHGQNQFQSIRGGLGAMGPVKLEPHVINDQIAPHRRLQSLQSLGSVKVEPQQNRIGTGIGPVKVENQLSVQS
VLQQQQQFFQMSRQSPQAAVAQMNYLQQQQILQLQQQQQLLRAFPHQQPQIQQFQQQNLPVRSVARPPYEPGTGARRLTQYIYQQRHRPQENNIEFWRKF
VAEFFASNARKRLCVSLYGNSRQTNGVFPQDLWHCEICNCKPGRGFETTVEVLPRLFKIKYDSGTLEELLYVDMPREYQNASGQIVLDYAKAIQESVFEH
LRVVRNGQLRIIFSPDLKICSWEFCACRHEELIPRRLIIPQVSQLGVVAQKYQASAQNASSSSSSPDLENNCNMFLASACQLAKALEIPLVNDLGFTKRY
VRCLQISEVVNCMKDLIDYTTQDAGKGPIESLAQFPRKTRPFSGVHDSDQQPPEKKQCQITGHTSNYDHHTVRASIMHPSTSSGVASANNSLGTSSTTSS
AITVGGLLHQNSMNSRIENQMTSPGSPYTGTSVQIPSAGSSTTWPPAQPNPSSPFSCLTPSSSGNPSQSSHNTLAASTAINHVCSANSPVQTPMQQSSQS
NEVDPNEFQSSVEKIMQEMISSRFSGTGGMVSVDYEGNNMDINRVTESRKNVLTNFPYVEGNVMRNKSINVGGGFGNLNGKNHLSASTSGITAEMGNVSG
TLSGRFAMPVMDHDTGMNHQQQELAYQLHNSIGAVYRYLDPQFDWTT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G43850 SEU SEUSS transcriptional co-regul... Potri.007G109400
[exp]
0 1
AT1G28340 AtRLP4 receptor like protein 4 (.1) Potri.004G047300
[exp]
1.00 0.7449
AT4G17180 O-Glycosyl hydrolases family 1... Potri.016G002800
[exp]
2.44 0.6979
AT2G03620 AtMRS2-5, AtMGT... magnesium transporter 3 (.1.2) Potri.010G158100
[exp]
3.74 0.7184
AT1G07530 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARAB... Potri.001G241700
[exp]
4.79 0.6521
AT4G02600 MLO1, ATMLO1 MILDEW RESISTANCE LOCUS O 1, S... Potri.013G069900
[exp]
7.74 0.6395
AT3G48425 DNAse I-like superfamily prote... Potri.015G088900
[exp]
8.12 0.7128
AT3G56720 unknown protein Potri.016G036000
[exp]
9.16 0.6782
AT4G18460 D-Tyr-tRNA(Tyr) deacylase fami... Potri.011G062200
[exp]
9.21 0.7046
AT3G16230 Predicted eukaryotic LigT (.1.... Potri.001G186600
[exp]
10.39 0.7076
AT5G22050 Protein kinase superfamily pro... Potri.009G015600
[exp]
13.26 0.6782

Potri.007G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.