Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09790 474 / 8e-168 PDE336, SDG15, ATXR5 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) AT5G24330 401 / 1e-139 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) AT5G44800 51 / 1e-06 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT3G01460 51 / 1e-06 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT1G77250 49 / 3e-06 RING/FYVE/PHD-type zinc finger family protein (.1) AT1G50620 46 / 4e-05 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G30860 45 / 4e-05 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT4G12620 45 / 6e-05 ORC1B, ATORC1B, UNE13 UNFERTILIZED EMBRYO SAC 13, origin of replication complex 1B (.1) AT3G59960 44 / 9e-05 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT4G14700 44 / 0.0001 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G058000 [exp] 668 / 0 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.012G018300 [exp] 439 / 1e-154 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 432 / 3e-152 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.003G126600 [exp] 68 / 4e-12 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.018G142300 [exp] 50 / 1e-06 AT2G19260 205 / 5e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G183700 [exp] 50 / 1e-06 AT1G77250 315 / 2e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Potri.002G079100 [exp] 50 / 3e-06 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.014G122400 [exp] 49 / 4e-06 AT4G02110 382 / 4e-112 transcription coactivators (.1) Potri.017G072460 [exp] 49 / 5e-06 AT3G01460 929 / 0.0 methyl-CPG-binding domain 9 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007782 [exp] 352 / 1e-121 AT5G24330 386 / 1e-135 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10016526 [exp] 347 / 1e-119 AT5G24330 388 / 4e-136 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040794 [exp] 206 / 5e-66 AT5G24330 221 / 5e-73 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10040793 [exp] 59 / 4e-11 AT5G24330 67 / 3e-15 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Lus10008495 [exp] 62 / 5e-10 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10029733 [exp] 53 / 2e-07 AT1G77250 313 / 5e-100 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10030625 [exp] 53 / 3e-07 AT3G01460 706 / 0.0 methyl-CPG-binding domain 9 (.1) Lus10030864 [exp] 52 / 5e-07 AT3G01460 511 / 2e-152 methyl-CPG-binding domain 9 (.1) Lus10042764 [exp] 52 / 7e-07 AT1G77250 301 / 1e-95 RING/FYVE/PHD-type zinc finger family protein (.1) Lus10000973 [exp] 51 / 2e-06 AT1G77260 652 / 0.0 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0390 [poplar] [flax] PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.007G109900.1 pacid=42765761 polypeptide=Potri.007G109900.1.p locus=Potri.007G109900 ID=Potri.007G109900.1.v4.1 annot-version=v4.1 ATGCATCCAGCCTCCACCACCACGGCGGCGGCTAGGCGACAAATCGGCTCGCGCCATCGCACCTCGGCACCTCGGAGGCCGTCTCCTCCGCCGTATCCGT CGCCGAAGAGGATGAAGCTGTTGACGGAGGTAATGGAAAAGGCGGCGTATGCGGTTGTGGAGAGGGAGGACTATGGCGATATCAGCTGCGAACAATGCCG CTCCGGGGAACGAGCGGAGGAGCTGTTGTTGTGTGATAAATGTGATAAAGGATATCACATGAAGTGCTTGAGACCGATTGTTGTTAGGGTCCCGATTGGC TCGTGGATTTGTAACAAGTGCTCTGGAGACGGCCAAGGACGTGTAAGAAGGTTATCGCAGAAGAAGATAATTGATTTTTTTAGGATTCAGAGGTGTGAGA AGGATGGCATTAAAGAGAAATGCAGGTCTCTCCAAGATTCTAGAAAACGACGGAGACGTTCATTGGTGTATCAAAAGAAAAGAAGGAGACTGTTGCCATT TATTCCATCAGAAGATCCCGCCCAAAGGCTCAAACAAATGGGCACCCTTGCTTCTGCTTTAACAGCATTACACATGGAATTTAGTGATGATTTGACCTAC TTGCCTGGCATGGCTCCTCAATTAGCCAATCAGGCCAAGTTTGAGCAGGGTGGCATGCAGGTCCTTTCCAAGGAGGACATTGAGACATTGGAACAGTGCA GAGCTATGTGCAAAAGAGGCGAATGCCCTCCTCTTTTAGTAGTTTTTGATTCATGTGAAGGCTATACAGTTGAGGCGGATGACCAGATAAAGGATTTGAC CATTTTAGCAGAATACTCAGGTGACGTGGATTACATTAAAAACCGAGAACATGATGATTGTGATAGTATGATGACCCTTCTTTTGGCCAGAGACCCATCT AAAAGCCTTGTCATCTGTCCCGATAAACGTGGAAATATTGCACGCTTTATCAATGGCATTAACAATCATACTCCGGATGGCAAGAAGAAGCAGAATTGTA AATGTGTGAGATACGATGTTAACGGGGAATGCCGGGTCATTTTGGTTGCTACTCGTGATGTTGCTAAAGGGGAGAGGCTATACTATGATTATAATGGACA TGAGCATGAATACCCTACTCAACATTTTGTTTGA
AA sequence Show only first row Show all	>Potri.007G109900.1 pacid=42765761 polypeptide=Potri.007G109900.1.p locus=Potri.007G109900 ID=Potri.007G109900.1.v4.1 annot-version=v4.1 MHPASTTTAAARRQIGSRHRTSAPRRPSPPPYPSPKRMKLLTEVMEKAAYAVVEREDYGDISCEQCRSGERAEELLLCDKCDKGYHMKCLRPIVVRVPIG SWICNKCSGDGQGRVRRLSQKKIIDFFRIQRCEKDGIKEKCRSLQDSRKRRRRSLVYQKKRRRLLPFIPSEDPAQRLKQMGTLASALTALHMEFSDDLTY LPGMAPQLANQAKFEQGGMQVLSKEDIETLEQCRAMCKRGECPPLLVVFDSCEGYTVEADDQIKDLTILAEYSGDVDYIKNREHDDCDSMMTLLLARDPS KSLVICPDKRGNIARFINGINNHTPDGKKKQNCKCVRYDVNGECRVILVATRDVAKGERLYYDYNGHEHEYPTQHFV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09790		PDE336, SDG15, ...	SETDOMAIN GROUP 15, PIGMENT DE...		Potri.007G109900 [exp]	0	1
AT4G14368			Regulator of chromosome conden...		Potri.008G167500 [exp]	3.74	0.8315
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190701 [exp]	9.64	0.8500
AT4G18465			RNA helicase family protein (....		Potri.004G052700 [exp]	12.88	0.8411
AT2G30470	B3	HSI2, VAL1	VP1/ABI3-LIKE 1, high-level ex...		Potri.013G157500 [exp]	15.00	0.8047
AT1G49730			Protein kinase superfamily pro...		Potri.004G140301 [exp]	18.22	0.8359
AT5G27220			Frigida-like protein (.1)		Potri.005G044200 [exp]	20.12	0.8338
AT3G61540			alpha/beta-Hydrolases superfam...		Potri.002G164700 [exp]	25.92	0.8177
AT1G47550		SEC3A	exocyst complex component sec3...		Potri.002G131400 [exp]	39.24	0.8219
AT1G08190		ZIP2, ATVPS41, ...	ZIGZAG SUPPRESSOR 2, vacuolar ...		Potri.001G212700 [exp]	41.89	0.7740
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G076550 [exp]	48.74	0.7925

Compare expression of checked genes

Potri.007G109900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.