Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18670 404 / 3e-133 Ankyrin repeat family protein (.1) AT5G04700 392 / 9e-128 Ankyrin repeat family protein (.1) AT5G04680 365 / 4e-117 Ankyrin repeat family protein (.1) AT5G04690 319 / 5e-100 Ankyrin repeat family protein (.1) AT5G04730 313 / 3e-98 Ankyrin-repeat containing protein (.1) AT5G35810 220 / 1e-65 Ankyrin repeat family protein (.1) AT3G54070 207 / 7e-59 Ankyrin repeat family protein (.1) AT5G35830 76 / 5e-15 Ankyrin repeat family protein (.1) AT3G12360 61 / 3e-09 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G60070 54 / 3e-07 ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G057900 [exp] 1112 / 0 AT3G18670 431 / 4e-144 Ankyrin repeat family protein (.1) Potri.008G023500 [exp] 532 / 0 AT5G04700 372 / 1e-118 Ankyrin repeat family protein (.1) Potri.008G022900 [exp] 510 / 3e-172 AT3G18670 399 / 4e-130 Ankyrin repeat family protein (.1) Potri.008G023101 [exp] 505 / 4e-170 AT5G04700 380 / 9e-122 Ankyrin repeat family protein (.1) Potri.008G023700 [exp] 494 / 9e-168 AT5G04700 371 / 8e-120 Ankyrin repeat family protein (.1) Potri.015G125000 [exp] 494 / 1e-165 AT3G18670 395 / 5e-128 Ankyrin repeat family protein (.1) Potri.008G023400 [exp] 388 / 1e-128 AT5G04700 336 / 8e-109 Ankyrin repeat family protein (.1) Potri.006G062700 [exp] 331 / 2e-104 AT3G54070 334 / 2e-106 Ankyrin repeat family protein (.1) Potri.006G062900 [exp] 318 / 7e-100 AT3G18670 280 / 4e-86 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027721 [exp] 772 / 0 AT3G18670 601 / 0.0 Ankyrin repeat family protein (.1) Lus10019887 [exp] 455 / 3e-150 AT5G04700 359 / 3e-113 Ankyrin repeat family protein (.1) Lus10035567 [exp] 417 / 2e-140 AT3G18670 367 / 1e-121 Ankyrin repeat family protein (.1) Lus10038357 [exp] 418 / 6e-137 AT3G54070 389 / 2e-126 Ankyrin repeat family protein (.1) Lus10014030 [exp] 402 / 1e-130 AT3G18670 343 / 8e-108 Ankyrin repeat family protein (.1) Lus10000489 [exp] 175 / 3e-47 AT3G18670 180 / 1e-49 Ankyrin repeat family protein (.1) Lus10019888 [exp] 175 / 2e-46 AT3G18670 116 / 2e-40 Ankyrin repeat family protein (.1) Lus10014701 [exp] 173 / 7e-46 AT3G18670 182 / 3e-49 Ankyrin repeat family protein (.1) Lus10003282 [exp] 174 / 1e-45 AT3G18670 164 / 6e-43 Ankyrin repeat family protein (.1) Lus10016672 [exp] 150 / 1e-37 AT3G18670 175 / 4e-46 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.007G110000.8 pacid=42765163 polypeptide=Potri.007G110000.8.p locus=Potri.007G110000 ID=Potri.007G110000.8.v4.1 annot-version=v4.1 ATGGACGACCTCAACATAAGTCAGGTTGCTTCCCCATCAAATAAGGATTCTTATAGTGATTTTACCTTAAGCAAGGCACCACGCAAGATGAAATCACGGC CTCCAGACTCACATGAGAGCTCAAGCAAGGAATACGAGATGAAAGATACGGCATACATTCAGTATCTGCCACTGTATAAGGCTGTTGACATTGGTGACCT AGAGGCCACAATGAAGTTCCTGAAAGAACATCCTGATGGACTGACTGCTAGCATTTCAGCAGATGGGGACACTGCCCTCCATGCTGCGGTTCTGGCAGGG CACATAGAGATTGTGGTGGAGTTGGTCAACCAGTTGGGGGAAGGTGACTTGGAAATCAAAAACAGAAATAATGCCACCGCGCTTAATTATGCTGCCATCG GAGGGATCACAAGGATTGCCGAGGATTTGGTGGCAAAGAATGAAGGTTTACTTAAAGTTCCAAACCAGAAAGGCCTGATCCCAGTTGTTGTAGCTTCTCT TTATGGTCATAAAGACATGGTTCGTTATCTTTACAGTGTGAGTCCGAAAGAAGAGCTCAGTCCAGCTACAAACAATAAGAATGGGGTTATGCTTCTCACA ACATGTATCATTGACGAACTCTATGATATTGCCTTGGATCTGCTTCAACATTACCCACAATTGGCTTTTTATCAAGATAGTGACAAAGACACAGCTCTTG ATATGCTGGCTCAAAAACCCTCTGCTTTCCCCAGTGGAACTCAATTTTCTTTGTGGCAAAAATGGATATACAAGTGTATCCGGGTACCTCAGCCACTTGC CTCTAGCAACAACCATGGAGACATTGAAAGGCCAGATAGGGGACCAACTGATCGAAGGAACATTGTTAAACGAGCATCTGACAAATTGTTGGTAATGGTT TGGAAGGGCTTGAGAATTTTTGTTCCAGCTATCAAGCATATGTATAACCTGAAGTTGATGCATGGCCAAGCACATGCAGTTCTCTGTTGCCTATGTGAAC AAATATCAACTTTGCATAAATCAGAATTCAAAGTAATTGGTGTGTACAGAGCTGTATTCAGTGCTGTTAAGCATGGAATTGTTGAGTTCATCATTGAAAT GATTAGACATTATCCTGACATCATATGGTCCGAGGATGAACTTAACCGGGGCATATTCTTATACGCAACCCTACAACGCCAAGAAAAGATATTCAGCCTT ATATACAAAATGGGAGCAAAGAAGAACTCTATGGCAACTTCTTGGGACAAGTATCAAAACAATATTTTACATCAAGCTGCATTCATAGCACCTTCCTCTC AGCTTGATCGTGTTTCAGGCGCACCATTACAAATGCAAAGAGAGCTACAATGGTACAAGGAGGTGGAGAGCATTGTCCAACCAAAGTACAGAGAGATGTT AAATTCGTCCCATAAAACAGCTCAAACTTTATTCACTGAACAGCACAGGAAATTAGTAGAAGAAGGGGAGAAATGGATGAAGGCCACGGCTGAATCTTGC ACAGTTGTGGCTGCTCTTATTGCTACCATAATGTTTTCAGCTATCTTTACTGTTCCAGGTGGATATGACCAGTATTCAGGCATTCCTATATACTTGAATC GGAATTCTTTCATGGTTTTCATAGTGTCCGACGCAATGTCATTGTTCGCGTCTTCATCATCATTATTGATGTTCTTCGGAATCCTGACATCGCGGTATAG AGAAGAAGATTTCCTCAAGTCCTTGCCTACAAAGTTGATAGTAGGCCTTTCGTGTCTTTTCTTCTCGATAGCAACCATGATGATAACCTTTGGCATTACA CTTGTTATGATGCTTCGTGAACGTTTTCACTGGGTTTCCTTTCCGATTATTTTGCTGGCTAGTCTTCCTGTCACGCTTTTTGCTCTGCTACAATTCCCTC TCCTTGTTGAGATCTTCTTTTCCACATATGGACCTGGAATTTTCGACAAGCCGAAGAAGTGGTGGTTGTTTTGA
AA sequence Show only first row Show all	>Potri.007G110000.8 pacid=42765163 polypeptide=Potri.007G110000.8.p locus=Potri.007G110000 ID=Potri.007G110000.8.v4.1 annot-version=v4.1 MDDLNISQVASPSNKDSYSDFTLSKAPRKMKSRPPDSHESSSKEYEMKDTAYIQYLPLYKAVDIGDLEATMKFLKEHPDGLTASISADGDTALHAAVLAG HIEIVVELVNQLGEGDLEIKNRNNATALNYAAIGGITRIAEDLVAKNEGLLKVPNQKGLIPVVVASLYGHKDMVRYLYSVSPKEELSPATNNKNGVMLLT TCIIDELYDIALDLLQHYPQLAFYQDSDKDTALDMLAQKPSAFPSGTQFSLWQKWIYKCIRVPQPLASSNNHGDIERPDRGPTDRRNIVKRASDKLLVMV WKGLRIFVPAIKHMYNLKLMHGQAHAVLCCLCEQISTLHKSEFKVIGVYRAVFSAVKHGIVEFIIEMIRHYPDIIWSEDELNRGIFLYATLQRQEKIFSL IYKMGAKKNSMATSWDKYQNNILHQAAFIAPSSQLDRVSGAPLQMQRELQWYKEVESIVQPKYREMLNSSHKTAQTLFTEQHRKLVEEGEKWMKATAESC TVVAALIATIMFSAIFTVPGGYDQYSGIPIYLNRNSFMVFIVSDAMSLFASSSSLLMFFGILTSRYREEDFLKSLPTKLIVGLSCLFFSIATMMITFGIT LVMMLRERFHWVSFPIILLASLPVTLFALLQFPLLVEIFFSTYGPGIFDKPKKWWLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18670			Ankyrin repeat family protein ...		Potri.007G110000 [exp]	0	1
AT3G15680			Ran BP2/NZF zinc finger-like s...		Potri.006G251300 [exp]	1.41	0.9690
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Potri.001G340500 [exp]	2.00	0.9758
AT2G35585			unknown protein		Potri.010G101500 [exp]	2.44	0.9587
AT2G46630			unknown protein		Potri.002G175400 [exp]	4.47	0.9451
AT3G15800			Glycosyl hydrolase superfamily...		Potri.001G192200 [exp]	6.24	0.9631
AT5G45540			Protein of unknown function (D...		Potri.015G107900 [exp]	7.21	0.9421
					Potri.008G018000 [exp]	9.38	0.9572
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Potri.017G074600 [exp]	9.59	0.9431	CLE25.1
AT3G17380			TRAF-like family protein (.1)		Potri.008G005300 [exp]	12.16	0.9608
AT3G05620			Plant invertase/pectin methyle...		Potri.005G022700 [exp]	13.41	0.9535

Compare expression of checked genes

Potri.007G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.