Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18690 119 / 2e-33 MKS1 MAP kinase substrate 1 (.1) AT1G68450 56 / 9e-10 PDE337 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) AT1G21326 54 / 1e-08 VQ motif-containing protein (.1) AT1G21320 49 / 8e-07 nucleotide binding;nucleic acid binding (.1.2) AT3G18360 43 / 8e-05 VQ motif-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G057800 [exp] 285 / 8e-99 AT3G18690 124 / 2e-35 MAP kinase substrate 1 (.1) Potri.005G189300 [exp] 101 / 3e-26 AT1G21326 75 / 4e-16 VQ motif-containing protein (.1) Potri.002G070600 [exp] 97 / 1e-24 AT1G21326 76 / 3e-16 VQ motif-containing protein (.1) Potri.012G055900 [exp] 45 / 5e-06 AT3G18360 73 / 2e-15 VQ motif-containing protein (.1) Potri.015G046600 [exp] 45 / 6e-06 AT3G18360 81 / 2e-18 VQ motif-containing protein (.1) Potri.010G123700 [exp] 45 / 6e-06 AT1G68450 64 / 9e-13 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1) Potri.006G199300 [exp] 39 / 0.0004 AT1G68450 60 / 1e-12 PIGMENT DEFECTIVE 337, VQ motif-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029768 [exp] 63 / 4e-12 AT1G21326 79 / 4e-18 VQ motif-containing protein (.1) Lus10042794 [exp] 52 / 1e-08 AT1G21326 74 / 9e-17 VQ motif-containing protein (.1) Lus10028604 [exp] 45 / 1e-05 ND / Lus10009033 [exp] 45 / 1e-05 AT3G18360 110 / 5e-29 VQ motif-containing protein (.1) Lus10012286 [exp] 37 / 0.0009 AT1G21326 50 / 8e-09 VQ motif-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05678 [poplar] [flax] VQ VQ motif
Representative CDS sequence Show only first row Show all	>Potri.007G110100.2 pacid=42766569 polypeptide=Potri.007G110100.2.p locus=Potri.007G110100 ID=Potri.007G110100.2.v4.1 annot-version=v4.1 ATGGACCCTTACCGCTATCCCACCACCGGCAAACCACCACCACCACCACCTAAAAAACAACTCCAAATCCAAGGCCCTAGACCTTCAGCACTAAAACTAA ACCAAGACTCTCACAAAATCAAGAAACCACCTCCCCCTCCTCCAAAGCAACCTGTCGTCATCTATGCAGTCTCTCCAAAGACCATCCACACGGAGGAATC CAACTTCATGGCCGTCGTCCAACGGTTAACAGGTCTCTCCTCCGGTGACTTCTTCCACGATGGGTCTGTTTCTCCAGCTGCAAGACTTGCTGCCACTGAG AAAGCAAGTCCAAGAGAATTAACAAGACCAAGTAACACTCAAGATAGTAGTGATGACGATCTCATGGAGATGCTTAAAGAAGTGGGTGCTGGTCAGATTC CAGGGATCTTGTCACCGGCACCGGCGATGTTACCGCCAGTACCAACTGGGTTTTTCTCTCCAGCGTCAACGGATGCAAATTCGCAGTCTTTCTTGAATGA TAATTTTAATATGAGTCCATTCTTCATGGCCAGTCCTTCAGGTTTATTTCCAGGTCCTAGTATAGTTTCTCCTTTACATTCTCCTGATATTTTTAGCAGC CTGTTCATGGATTTCTAG
AA sequence Show only first row Show all	>Potri.007G110100.2 pacid=42766569 polypeptide=Potri.007G110100.2.p locus=Potri.007G110100 ID=Potri.007G110100.2.v4.1 annot-version=v4.1 MDPYRYPTTGKPPPPPPKKQLQIQGPRPSALKLNQDSHKIKKPPPPPPKQPVVIYAVSPKTIHTEESNFMAVVQRLTGLSSGDFFHDGSVSPAARLAATE KASPRELTRPSNTQDSSDDDLMEMLKEVGAGQIPGILSPAPAMLPPVPTGFFSPASTDANSQSFLNDNFNMSPFFMASPSGLFPGPSIVSPLHSPDIFSS LFMDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18690		MKS1	MAP kinase substrate 1 (.1)		Potri.007G110100 [exp]	0	1
AT1G80300		ATNTT1	nucleotide transporter 1 (.1)		Potri.001G175200 [exp]	1.73	0.9184	AATP1.1,PtrAATP1
					Potri.017G111050 [exp]	2.23	0.9165
AT1G64950		CYP89A5	"cytochrome P450, family 89, s...		Potri.007G088154 [exp]	2.44	0.9345
AT1G64940		CYP89A6	"cytochrome P450, family 87, s...		Potri.007G088018 [exp]	3.16	0.9270
AT1G76250			unknown protein		Potri.002G011400 [exp]	3.74	0.9140
AT3G02910			AIG2-like (avirulence induced ...		Potri.019G041100 [exp]	4.00	0.9124
AT3G03980			NAD(P)-binding Rossmann-fold s...		Potri.013G059100 [exp]	4.24	0.9158
AT1G35620		ATPDI8, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.019G082400 [exp]	6.70	0.9084
AT2G47820			unknown protein		Potri.008G210200 [exp]	7.07	0.9036
AT4G33890			unknown protein		Potri.009G090500 [exp]	8.42	0.8540

Compare expression of checked genes

Potri.007G110100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.