Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G43770 135 / 1e-35 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT3G02890 94 / 1e-20 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G16680 88 / 1e-18 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G61120 66 / 2e-11 unknown protein AT5G61090 44 / 0.0002 Polynucleotidyl transferase, ribonuclease H-like superfamily protein (.1) AT4G17850 42 / 0.0002 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G173200 [exp] 149 / 1e-40 AT1G43770 187 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.005G189400 [exp] 137 / 4e-36 AT1G43770 142 / 1e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.019G041900 [exp] 102 / 4e-23 AT5G16680 288 / 6e-79 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.013G077900 [exp] 99 / 3e-22 AT5G16680 536 / 1e-165 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.003G091000 [exp] 77 / 8e-15 AT3G02890 177 / 3e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.014G040100 [exp] 67 / 7e-12 AT5G61120 127 / 1e-31 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028603 [exp] 112 / 7e-27 AT1G43770 106 / 1e-24 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10009530 [exp] 105 / 4e-24 AT5G16680 395 / 5e-115 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10020350 [exp] 105 / 4e-24 AT3G02890 439 / 2e-131 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10035396 [exp] 57 / 8e-09 AT5G61120 76 / 4e-15 unknown protein Lus10030998 [exp] 55 / 5e-08 AT5G61120 71 / 1e-13 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G110400.3 pacid=42766624 polypeptide=Potri.007G110400.3.p locus=Potri.007G110400 ID=Potri.007G110400.3.v4.1 annot-version=v4.1 ATGTCAAGTTCTGGTGATACTGTTGTTGACAAGATGATTGTTTGTCAGAAGTGTGGTGATAGGGGAGATGTGAAACGTCTCATATACTGTAACAAGTGTC ACGTTTCAGCCGAGCATAGTTATTGTCTGGACACATTGCCAAGGAAAGGCGAGAAAGAAGTCCTTTGGGCATGCGAGGAATGTTGCTCAATAGATGCTAA TCCTACTCCAGTTTCATCAAGAAAAAGTGAACGAATAGAAGGAGCTTCCAAGATTAAGTTGAAAAGGATGAAGTTGAGAAAGCAGACAAGATTTTCTCCA GTTACAGCAAAGGCTTTTACAGATAGTTCGAGCCAAGTGAAGCAGCCTGTAAGTGACTATTGTTGCCTGAAAGAGGCGATAGAAACACAATCAACTTCTC AAAGTCTTCAAAATGAAGAGCTCAAAAAACCAAGGAGGAGGTTGGTTGTTAAAGATGATAGCAGCTCAGATGAGGAATCTGGCGTTATTGAGTGTTTGGT TGTCAATCCTCTTCAATCAGCTCCTGCTGTTGCTGCTGATTCACTGAATGTATCCCACAGTTCACCATCTTCAGAATCCGATAGATACATCCATGCAAAA CCAATCATCGATCCAATTTGGAAGGGAAGCTTCAACATTCAAAATTTGGAAAATCATACCTCTGTCTTACTTTTGGCCCATTTATCGACAAATGCTTGCT CAAAAGTATGGGATGCAGCGAGTAACCTCCCAGCACAGCTGAACATAGAAATTTTGTCCAGGTCTGATGCATGGCCCCATAAGTTTCAGATAACACCGCC CACTGTTGAAAGTATCGGTCTTTATTTTTTTCCACAAAGAGAAAGAGATGAAAAAGTTTTTGAAAGTCTTCTGGATGAGATGATAATTCATGATCGAGCT CTGAAGGCGGTGATAAATGACTTGGAACTGTTGGTCTTCTCTTCTTGTGAACTGCCCCAAGAACATTGGCGTTTCTGCCAAAAGTATTATTTGTGGGGGG TGTTTAAAGCAACTAAAAAACATGCTGTTGCTAGCAATGCAGAGGCTTCCATGCCCTCCAACCTCTCAAATAATGCTGGCACTCAAGATGGGGAGAGTGT TGGATTAGTCACCCGGAATCCACTCAAAGTCCCTTCAGCAAAACAAATGGCTGCACATTTGTTCTGA
AA sequence Show only first row Show all	>Potri.007G110400.3 pacid=42766624 polypeptide=Potri.007G110400.3.p locus=Potri.007G110400 ID=Potri.007G110400.3.v4.1 annot-version=v4.1 MSSSGDTVVDKMIVCQKCGDRGDVKRLIYCNKCHVSAEHSYCLDTLPRKGEKEVLWACEECCSIDANPTPVSSRKSERIEGASKIKLKRMKLRKQTRFSP VTAKAFTDSSSQVKQPVSDYCCLKEAIETQSTSQSLQNEELKKPRRRLVVKDDSSSDEESGVIECLVVNPLQSAPAVAADSLNVSHSSPSSESDRYIHAK PIIDPIWKGSFNIQNLENHTSVLLLAHLSTNACSKVWDAASNLPAQLNIEILSRSDAWPHKFQITPPTVESIGLYFFPQRERDEKVFESLLDEMIIHDRA LKAVINDLELLVFSSCELPQEHWRFCQKYYLWGVFKATKKHAVASNAEASMPSNLSNNAGTQDGESVGLVTRNPLKVPSAKQMAAHLF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G43770			RING/FYVE/PHD zinc finger supe...		Potri.007G110400 [exp]	0	1
AT2G19260			RING/FYVE/PHD zinc finger supe...		Potri.006G075400 [exp]	3.87	0.9015
					Potri.007G010000 [exp]	4.12	0.9155
AT5G01310	bHLH	APTX, bHLH140	APRATAXIN-like (.1)		Potri.016G120200 [exp]	6.63	0.9036
AT1G64790		ILA	ILITYHIA (.1.2)		Potri.019G024200 [exp]	6.92	0.9000
AT4G31830			unknown protein		Potri.018G106300 [exp]	8.30	0.9048
AT1G52630			O-fucosyltransferase family pr...		Potri.001G171500 [exp]	8.83	0.8621
AT1G73240			unknown protein		Potri.003G213050 [exp]	11.00	0.8885
AT1G10417			unknown protein		Potri.008G190600 [exp]	11.61	0.8913
AT1G34150			Pseudouridine synthase family ...		Potri.002G061650 [exp]	12.48	0.8861
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G116050 [exp]	12.48	0.8696

Compare expression of checked genes

Potri.007G110400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.