Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24320 411 / 1e-134 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G48870 405 / 1e-133 Transducin/WD40 repeat-like superfamily protein (.1) AT5G53500 404 / 3e-132 Transducin/WD40 repeat-like superfamily protein (.1) AT1G64610 372 / 2e-120 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G54200 356 / 3e-112 Transducin/WD40 repeat-like superfamily protein (.1) AT3G15470 354 / 8e-111 Transducin/WD40 repeat-like superfamily protein (.1) AT2G37670 290 / 8e-87 Transducin/WD40 repeat-like superfamily protein (.1) AT5G02430 283 / 7e-84 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 90 / 3e-19 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 81 / 3e-16 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G057600 [exp] 1096 / 0 AT5G24320 384 / 3e-124 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.015G009700 [exp] 430 / 1e-141 AT5G24320 621 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.002G174100 [exp] 427 / 4e-140 AT5G53500 523 / 1e-177 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G086600 [exp] 426 / 1e-139 AT5G24320 514 / 1e-173 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.003G144400 [exp] 422 / 2e-138 AT5G24320 516 / 4e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.012G018200 [exp] 397 / 5e-129 AT5G24320 606 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.011G122500 [exp] 354 / 3e-110 AT3G15470 835 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G403400 [exp] 343 / 6e-106 AT3G15470 828 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G084600 [exp] 295 / 3e-88 AT2G37670 920 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033525 [exp] 505 / 1e-172 AT1G48870 400 / 1e-132 Transducin/WD40 repeat-like superfamily protein (.1) Lus10020846 [exp] 505 / 1e-172 AT1G48870 407 / 3e-135 Transducin/WD40 repeat-like superfamily protein (.1) Lus10032436 [exp] 394 / 1e-127 AT5G24320 516 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10023033 [exp] 392 / 8e-127 AT5G24320 508 / 3e-171 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003206 [exp] 374 / 9e-121 AT1G64610 427 / 1e-141 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10017312 [exp] 367 / 7e-118 AT1G64610 439 / 4e-146 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10022377 [exp] 357 / 5e-114 AT5G24320 530 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10003974 [exp] 288 / 3e-85 AT2G37670 837 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10024399 [exp] 286 / 6e-85 AT2G37670 850 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10039934 [exp] 256 / 1e-75 AT5G54200 691 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.007G110500.1 pacid=42765588 polypeptide=Potri.007G110500.1.p locus=Potri.007G110500 ID=Potri.007G110500.1.v4.1 annot-version=v4.1 ATGCTGAGTTCTGATGAAGGAGAGAGTGATCTGTTCTTTGATTCTGTAGATTACTTGGAATTGGGGTGTGATAAGTTAGAGTATGATATTTGGTTGAATG AGCCACAGAGTGTTAAGGAGAGACGCCAAGGTTTCTTACGCGGAATGGGTCTAGGTGGGTTTGCTTCCAACATTGATGAGAATCTTGGTTTGGAGAGGAT CACTGAATGCAGCGAGGCTGTATCAAGTTCTTTAGTTTCATGTACAAATGTTGAAGAGGTAAATTTGGTTAGTTATAGTGCTGGTAGAGAAGAAAATTCT GAAGCCAATTGCATGGTTGATGAAATCCTTCCTTTCTCGATGGATAAACCGGGTGCAGCTTCTGAAAACGAGAACATTGGACCTTCAGTCCATTTGCGGC AAGGATGTGAACAATGTGAAGATGAAAAATGTAAAAAGTTTGATTCAGAAAAAAGTAAAACGAAGAGCTGGTGGAAACTCTTTGTAAGAAAGAGGAAGGA AAGAGGAGGTAGATGTGCATCTGGGGTATCCAAGTTGGATACCAAAGCACCAAAAACAAACAGAACGAAGGTGAAGCAGAACAAAAAAGGGTGCATGGAG TTTTCAGGGGTATATATGGGACAAGAAATTCAAGCTCACAAGGGCTTCATTTGGACAATGAAGTTTAGTCCAGATGGGCAGTATTTGGCAACTGGGGGCG AAGACAGGATTATCCGCATTTGGCGTGTTACTTCAGTGGATTCATCGTGCAAATCTTTCTCATCTGAAGGACATTCTGACAGCAATCTGAAAGAAGGCAA ATCTAGTTTGAGAACAAAGAAGAGAATGCATTCATCTGTTGTCATTCCTGAGAAGGTTTTCCAGATTGAAGAGACACCATTGCAAGAATTTCATGGTCAT ACCAGTGAAATTTTAGACCTGGCATGGTCCGATTCAAATCACCTTCTTTCGTCTTCCATGGATAAAACTGTTCGTTTGTGGCTAGTGGGTTGCAATTATT GTCTGGGCATTTTTCACCACAGTAGTTATGTAACATGCATTCAGTTCAATCCTGTTGATGAGAACTATTTCATTAGTGGCTCCATCGATGGAAAAGTTAG AGTTTGGGGAGTGTCTGAGAAGCGGGTTGTTCACTGGGCCGATGTACGAGATGTAATATCTGCCATATGTTACCAGCCAGATGGGAGAGGGTTTGTGGTT GGTACTATTATTGGCAGTTGCCGTTTCTACGAAGTATCAGGCACTGATCTCCAGCTTGAGGCAGAAATACATATTCAAGGCAGAAATAGAAACTCTGGCA ACAGAATTACTGGCATTCAGTTTTCCCAGGAAATATGTCCAAGGGTTATGATCACCTCTGAAGATTCTAAAGTTCGTGTATTTGATGGGGTTGACGTTGT CAATAAATTTAAAGGTCTTCCAAAGTCAGGAAGTCAGATGTCGGCTTCGTTTACTTCAAAGGGGAGACATATAATCTCGGTTGGAGAGGACTGTCGTGTT TATGTATGGAATTATGATGGCTTGTGCACCCCATGGTCTAAACACACAAAATCTGTGAGGTCCTGCGAGTATTTCTTCTCTGAAGGTGTGTCTGTTGCTG TGCCTTGGTCAGGCCCGGGAACTGAATTGAGAGGCCTGAGCAGTAGAAGTCTCCGGAGTTATGTGCAAACAGAGGGGGATGCTTCCTGGATGAGGGACTC GGACCGTTTTTCTCTTGGCAGTTGGTTCTTCATGGATGGCCGATGCAGGTGGGGCTCTGCGACATGGCCTGAGGAGAAACTTCCTACGTGGGATGTGCCA GTTTTAGAAGATGAATATCAAAACCAGCAAACTGAGGACCTTCATCAACAGCATTGCGTTAACACCAATGACCAGATCTCCTTACCAGATGCATGGGGCC TCGTGATTGTGACTGCAGGATGGGATGGAAAAATCAAAACTTTCCACAACTATGGATTGCCTATCAAGCTCAAATAG
AA sequence Show only first row Show all	>Potri.007G110500.1 pacid=42765588 polypeptide=Potri.007G110500.1.p locus=Potri.007G110500 ID=Potri.007G110500.1.v4.1 annot-version=v4.1 MLSSDEGESDLFFDSVDYLELGCDKLEYDIWLNEPQSVKERRQGFLRGMGLGGFASNIDENLGLERITECSEAVSSSLVSCTNVEEVNLVSYSAGREENS EANCMVDEILPFSMDKPGAASENENIGPSVHLRQGCEQCEDEKCKKFDSEKSKTKSWWKLFVRKRKERGGRCASGVSKLDTKAPKTNRTKVKQNKKGCME FSGVYMGQEIQAHKGFIWTMKFSPDGQYLATGGEDRIIRIWRVTSVDSSCKSFSSEGHSDSNLKEGKSSLRTKKRMHSSVVIPEKVFQIEETPLQEFHGH TSEILDLAWSDSNHLLSSSMDKTVRLWLVGCNYCLGIFHHSSYVTCIQFNPVDENYFISGSIDGKVRVWGVSEKRVVHWADVRDVISAICYQPDGRGFVV GTIIGSCRFYEVSGTDLQLEAEIHIQGRNRNSGNRITGIQFSQEICPRVMITSEDSKVRVFDGVDVVNKFKGLPKSGSQMSASFTSKGRHIISVGEDCRV YVWNYDGLCTPWSKHTKSVRSCEYFFSEGVSVAVPWSGPGTELRGLSSRSLRSYVQTEGDASWMRDSDRFSLGSWFFMDGRCRWGSATWPEEKLPTWDVP VLEDEYQNQQTEDLHQQHCVNTNDQISLPDAWGLVIVTAGWDGKIKTFHNYGLPIKLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24320			Transducin/WD40 repeat-like su...		Potri.007G110500 [exp]	0	1
AT2G20180	bHLH	PIF1, PIL5, bHL...	PHY-INTERACTING FACTOR 1, phyt...		Potri.002G252800 [exp]	2.44	0.8939	Pt-PIL5.1
AT4G04890	HD	PDF2	protodermal factor 2 (.1)		Potri.004G020400 [exp]	3.31	0.9110	ATML1.2
AT4G31780		UGT81A1, EMB279...	UDP-glycosyl transferase 81A1,...		Potri.018G016600 [exp]	4.69	0.8532
AT3G45780		RPT1, NPH1, JK2...	ROOT PHOTOTROPISM 1, NONPHOTOT...		Potri.001G342000 [exp]	5.29	0.8761	Pt-PHOT1.1
AT3G57800	bHLH	bHLH060	basic helix-loop-helix (bHLH) ...		Potri.006G057200 [exp]	11.22	0.8577
AT4G21620			glycine-rich protein (.1.2)		Potri.011G045000 [exp]	11.22	0.8225
AT3G25920		RPL15	ribosomal protein L15 (.1)		Potri.010G124301 [exp]	14.56	0.8160
AT1G18870		ATICS2, ICS2	ARABIDOPSIS ISOCHORISMATE SYNT...		Potri.012G070000 [exp]	15.49	0.8550
AT3G18080		BGLU44	B-S glucosidase 44 (.1)		Potri.015G041300 [exp]	16.79	0.8798
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.010G002900 [exp]	18.13	0.8189

Compare expression of checked genes

Potri.007G110500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.