Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PHOR1-2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09800 398 / 4e-137 ARM repeat superfamily protein (.1) AT5G64660 395 / 8e-136 ATCMPG2 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) AT3G18710 376 / 4e-128 ATPUB29 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) AT5G65920 125 / 1e-31 ARM repeat superfamily protein (.1) AT2G35930 123 / 3e-31 PUB23 plant U-box 23 (.1) AT1G66160 120 / 4e-30 ATCMPG1 "CYS, MET, PRO, and GLY protein 1", CYS, MET, PRO, and GLY protein 1 (.1.2) AT3G49810 118 / 4e-29 ARM repeat superfamily protein (.1) AT5G37490 114 / 9e-28 ARM repeat superfamily protein (.1) AT1G49780 111 / 5e-27 PUB26 plant U-box 26 (.1) AT3G19380 111 / 7e-27 PUB25 plant U-box 25 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G057500 [exp] 714 / 0 AT5G09800 385 / 5e-132 ARM repeat superfamily protein (.1) Potri.002G070500 [exp] 325 / 2e-108 AT3G18710 288 / 6e-94 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.005G189800 [exp] 308 / 1e-101 AT3G18710 260 / 4e-83 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Potri.008G137700 [exp] 154 / 3e-42 AT5G37490 333 / 9e-111 ARM repeat superfamily protein (.1) Potri.017G135000 [exp] 154 / 3e-42 AT5G37490 375 / 4e-127 ARM repeat superfamily protein (.1) Potri.004G083900 [exp] 150 / 7e-41 AT5G37490 354 / 8e-119 ARM repeat superfamily protein (.1) Potri.016G069400 [exp] 144 / 5e-39 AT3G52450 511 / 0.0 plant U-box 22 (.1) Potri.010G103100 [exp] 141 / 2e-37 AT5G37490 315 / 1e-103 ARM repeat superfamily protein (.1) Potri.006G202600 [exp] 140 / 2e-37 AT3G52450 511 / 0.0 plant U-box 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005810 [exp] 464 / 5e-163 AT5G64660 400 / 7e-138 "CYS, MET, PRO, and GLY protein 2", CYS, MET, PRO, and GLY protein 2 (.1) Lus10006791 [exp] 327 / 8e-111 AT5G09800 270 / 1e-88 ARM repeat superfamily protein (.1) Lus10029771 [exp] 280 / 1e-90 AT3G18710 259 / 1e-82 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10042798 [exp] 278 / 8e-90 AT3G18710 275 / 9e-89 ARABIDOPSIS THALIANA PLANT U-BOX 29, plant U-box 29 (.1) Lus10010598 [exp] 135 / 2e-35 AT3G49810 498 / 6e-176 ARM repeat superfamily protein (.1) Lus10021267 [exp] 130 / 1e-33 AT2G35930 474 / 5e-167 plant U-box 23 (.1) Lus10016166 [exp] 126 / 4e-32 AT3G52450 462 / 2e-161 plant U-box 22 (.1) Lus10013584 [exp] 126 / 5e-32 AT2G35930 471 / 2e-165 plant U-box 23 (.1) Lus10029393 [exp] 125 / 1e-31 AT3G52450 462 / 1e-161 plant U-box 22 (.1) Lus10001079 [exp] 121 / 3e-30 AT5G37490 290 / 1e-93 ARM repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.007G110600.1 pacid=42765567 polypeptide=Potri.007G110600.1.p locus=Potri.007G110600 ID=Potri.007G110600.1.v4.1 annot-version=v4.1 ATGGTGAGAGACGTTGATTTGTACGTTACAGTCCCTAGTTTCTTCAGGTGTCCAATCTCACTTGACGTTATGAAATCACCTGTCAGTCTCTGTACTGGAG TCACCTACGACCGCACCAGCATCGAACGCTGGTTGGATAGCGGCAACAACACGTGTCCCGCCACCATGCAGGTTCTCAACAGCAAGGAGTTTGTGCCAAA CCGCACTCTGCAGAGGCTCATCAAGATCTGGTCCGACTCGGTCCAGACTCAGAAAGACAACCGAGTTGACTCAGCCGCCAGCTCGGTCGTCACGAGGGAA GATATTGAAGTTTTGGTTAAAGAAATGAGAGCCAAGAAGGATAAAACTGATCGTTTGTCGAAATTCATTTGTTTCGCTAAAGAATCCGAAGAGAACTGCG AGTTCTTGGCGAAATTTGATGGCTTTGTTGAAATGCTTGTTGGTTTTCTAGTCGGTGATAAAGACATTAATTTTCTCGAACGAGTTGTTAAAGTTTTTGT TTTGATTTTGAACAAAGTTGGAGATTACAAAGCTTTAAGGTTGTTGATTCTGAAGCAAAACAATGATTGTTTGTCTGCCCTCCTTGCTGTCTTAAAACAA GGAAGAAGCGTGAGTTCACAAATTGGAGCTCTTAAAATAATCGAAGCTATAACCCTCGACGCAGAGTCTAAACAGATGGTCTCGGAGAAAGAAGGGTTCT TGCTCGAATTGGTGAAATTGATCAGCTTAGAAAATGATCCAAGATTGATCGAAGCAAGTTTATCATGTTTAATCGCGATTTCTATGTCGAAACGAGTTAA GACCAACCTAATCAATTTCAAAGTAATTGCAGAGTTAAGAAAGTTATTAACCGGAGGGCAGAAAGCGAGCGTTTCGATCATAGAAAAGGCATTGAAGTTG CTAGAAATGGTAACATCGTTGAGAGAAGGGAGAGCGGAGTTTTGCAATGACACGGCGTGTGTGGAGGCTGTGATGAACAAAGTGCTGAAAGTTTCGAGCG AGGCGACGGAGCATGCGGTGATGATATTGTGGAGTGTGTGTTATTTGTTTAGAGACGGTGATGCACAAGATGCTTTAGTGAAGAGTAACGGATTGACGAA GATACTGTTGTTAATGCAAAGTAACTGTTCACCTGTAGTCAGGCAAATGTCTGGTGATTTGTTGAAGATTTTCAGGGTGAATTCTAAGTTTAGTTCTTGT CTTTCTAGTTATGATACTAAGACTACTCATATCATGCCCTTCTGA
AA sequence Show only first row Show all	>Potri.007G110600.1 pacid=42765567 polypeptide=Potri.007G110600.1.p locus=Potri.007G110600 ID=Potri.007G110600.1.v4.1 annot-version=v4.1 MVRDVDLYVTVPSFFRCPISLDVMKSPVSLCTGVTYDRTSIERWLDSGNNTCPATMQVLNSKEFVPNRTLQRLIKIWSDSVQTQKDNRVDSAASSVVTRE DIEVLVKEMRAKKDKTDRLSKFICFAKESEENCEFLAKFDGFVEMLVGFLVGDKDINFLERVVKVFVLILNKVGDYKALRLLILKQNNDCLSALLAVLKQ GRSVSSQIGALKIIEAITLDAESKQMVSEKEGFLLELVKLISLENDPRLIEASLSCLIAISMSKRVKTNLINFKVIAELRKLLTGGQKASVSIIEKALKL LEMVTSLREGRAEFCNDTACVEAVMNKVLKVSSEATEHAVMILWSVCYLFRDGDAQDALVKSNGLTKILLLMQSNCSPVVRQMSGDLLKIFRVNSKFSSC LSSYDTKTTHIMPF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09800			ARM repeat superfamily protein...		Potri.007G110600 [exp]	0	1	PHOR1-2
AT4G36750			Quinone reductase family prote...		Potri.007G029600 [exp]	2.82	0.7805
AT5G51760		AHG1	ABA-hypersensitive germination...		Potri.012G131800 [exp]	4.47	0.7780
AT5G14070		ROXY2	Thioredoxin superfamily protei...		Potri.003G167000 [exp]	7.61	0.7950	PtrGrx22
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.012G032900 [exp]	12.80	0.7305
AT2G48010		RKF3	receptor-like kinase in in flo...		Potri.013G028000 [exp]	15.81	0.7411
AT1G60790		TBL2	TRICHOME BIREFRINGENCE-LIKE 2,...		Potri.010G043300 [exp]	17.14	0.8021
AT3G20300			Protein of unknown function (D...		Potri.001G356200 [exp]	24.73	0.7218
AT1G36050			Endoplasmic reticulum vesicle ...		Potri.003G023500 [exp]	30.38	0.7122
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Potri.007G007500 [exp]	31.46	0.7574
AT4G24040		TREHALASE1, ATT...	trehalase 1 (.1)		Potri.006G068300 [exp]	36.78	0.6957

Compare expression of checked genes

Potri.007G110600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.