Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18730 1311 / 0 BRU1, MGO3, TSK TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035748 [exp] 1438 / 0 AT3G18730 1194 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10037327 [exp] 1433 / 0 AT3G18730 1167 / 0.0 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035746 [exp] 125 / 2e-31 AT3G18730 99 / 3e-23 TONSOKU, MGOUN3, BRUSHY1, tetratricopeptide repeat (TPR)-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13181 [poplar] [flax] TPR_8 Tetratricopeptide repeat CL0020 [poplar] [flax] TPR PF13424 [poplar] [flax] TPR_12 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Potri.007G110800.1 pacid=42765240 polypeptide=Potri.007G110800.1.p locus=Potri.007G110800 ID=Potri.007G110800.1.v4.1 annot-version=v4.1 ATGCCGATAAGCAAAGAAGAGCAAGAAATGCAGACAGCGAAACGCGCATTTGTTAATGCGCGTGAAGTAGGGAATCACCAAGAGGAAGCAAGATGGGCAA ATTTGATAGGAGATATGTATAAGAACAGAGGGGAGTATGTGAAGGCATTGAAATGGTTACGTATAGATTATGAGATTTCGAACAAGTACTTGCCTGAGAA GCAGTTGTTGCCTACTTGTCAATCTATTGGAGATGTTTATCTCAGACTTCATGATTTCAAGCATGCTTTGGTTTACCAGAAAAAGCATTTGGATCTTGCC AAGGATGCCAACGACCTTGTTGAACAGCAAAGAGCCAGCACCCAGCTTGGTCGAACATACCATGAAATGTTCTTAAAATCTGACAATGACCATTCTTCAA TTCGGAATGCCAAGAAGTACTTCAAGTCAGCCATGAAGCTAGCTCAGTCTCTCAAGGAAAATCCACATACTAATAAATCGTCTTTCCTCAAAGAATATAT AGATGCCCATAATAATATAGGAATGATTGAAATGGATCTTGATAACTTGGAAGAAGCCAAGAAAATACTTGCTAGAGGACTAGAAATATGCGATGAGGAA GAAGTTGATGCAGATGATGATGGTCGGAGCAGGCTCCATCACAATCTTGGAAATGTTTACATGGAGTTGAAGGTGTGGGATAAGGCTCAGGAACACATTA AAAAAGATATTAGAATTTGTAATAGAATAGGGCATTGCCAAGGGGAGGCAAAAGGGTACATCAATCTTGGTGAATTGCATTACAGGGCTCAAAAGTATGA GGAAGCAAATCTTTGCTATCATAAGGCACTTGATCTGGCAAAATCCATGGAAGATGAGGATACTTTGGTCAAGGAAATTGGTCATAATATTGGAACTGTA AAAGAAGCTATGAAGGTGATGGATGAATTGAAGAAAGAAGAGCAGAATCTTAAAAAGTTAACTAGAAGTATAGTCACTGCAAGGGGAACACATCATGAGC GGAAGTGTTTGCTGCAGCAGAATGCATCCCTTGACTGCCTCATTGAGAAGTCGAGCATTATACTTGCATGGTCAAAGCATCATGAATTTGCAAAAAGGAA GAAGAGAATAGCTAGTGAACTCTGTGATAAAGAGAAGCTGGGCGATTCATTTCTACTTCTTGGAGAATCATACCAGAAGCTCAGAAAATTCAAGAAAGCC ATTAAATGGTTCATGAAGAGTTGGGAGACATACAAGTCAATCAGCAACTTGGAGGGTCAAGCATTAGCAAAAATTAATATTGGTGATGTTCTGGACTGTG ATGGTGATTGGATGGGAGCTCTAAATGCATTTGAGGAGGGCTATAGGATTGCTGTTAATGCTAATCTTCCCTCTGTTCAGCTTTCAGCATTAGAGAACAT GCACTATAGCCACATGATAAGATTTGACAATGAAGAAGAGGCCAGGAGGTTGCAGCATGAAATTGAGAGGTTAAAGTCCAAAAACACAGAGCTTGAAAGG CAGAATTTGGCAACGGATTGCTGCTCTGAGACTGATACAGATGGGGATGATCACTTGTCAGATTGTAGATCTAATGCATCCTGCTCCCAAGAAATTAACA AATCTGGTTCTGCAAGATCAAAATCTTTAGCTGGTGCTGAAGGGTTGGATGATGATTTACCTCTGATTTCACTCCTTCGGTCCCATAAAAATTCTCCCGG AACAAAGTCAACTCAAGAAGAAATGCATAATACTTCTACTTGGCCAACTGAAGCCTCTCCAAAATGTTTTTCCAAAACAGCTAGTGATCAGCAGACAGTT CTTAGTCGTAAACGTATTAGAATAGTCCTTTCAGATGATGAAGATGAAATGCATGATAACGTAGACGGTTCCAGAGAAAGGCTCAATAGATGCCCTCCGG AGGATGTTGCTACTTCTAATGGATTTATGGGGGCAAGCAATCCAGCTATTTCTGCATGTGCATTTCAGGGTGTATCAACAGTTGCTTCCAAATGTGCTAC CAGTTCCTGGAATCCCAATAACAATGAAGAAAGCACTTCTTCATACAAATCTCAGAGCCCAAAAATTGTGACTCCCAAAGGCAAAGTTTTCAGATCTTCA AGCAACAATGAAGTTGTTTTTGCATGTGATCTTGCTGCTAGTGGCTCCAAATGTGATGTCTCTGAGAACTTAACGCATAAAAACAATGCTGCTCATCTCA GGTTGCACAATTCTGAGAATGATGATAATCAGTGTATTGTATTCAGAATTGACAATGACCTGATACAAGTAGATGCAGCTTCATACCTCGCTTTTGATAA ATTGAGCATTGAGTCTATGACTGTTGAGCTGGCCTGTTTGTACTATTTGCAGCTTCCTACAGAGAAGAGATCAAAAGGTCTCTTGCCCATCGTTCAGCAT ATGAAATGTCATGGAAGAGTTCTAGATTCCATAGAAGCATTTGAAACTCTCAAGGGTGATCAAGGAAATATCCTAATAGAAGTTTCCATTAATGGTTGGG TTCAAAAGCGCTTGATGAAGCTGTACATCGACTGCTGTGAGGAGTTATCCGAGGCACCTAATATGAAGTTGCTTAAGAAACTATACATTTCAGAGGTAGA GGATGAAGTCATTGGATCTGAATGTGAATTGCAAGATATATCAGTAACTCCACTGTTGAATGCCCTGGATACCCACAAAACAGTTGCCGTGATAGACCTT TCCCATAATTTTTTGGGGAATGGAACAATGGAGAAACTTCAACAATTTCTCACATCAGGGCAAAAATACGGTGATTTGACTTTGGACCTGCATTGTAATC GGTTTGGTCCAACTGCTTTATTTCAGATCTGTGAATGTCCTGTTCTCTTTGCTCGCTTGGAAGTTCTTAATATCTCTGGAAACCGTCTCACTGATGCATG TGGATCTTACCTTTCAACCATATTGGAAAACTGCAGAGCCCTATACAGCTTGAATATTGAGCGTTGTTCCATAACAACAAGATCAATTCAAAAGGTGGCT GATGCACTAAATGCGAGCTTGGTCTTGGCACAACTTTCAATAGGATATAATAACCCTGTATCTGGAAACGCTATCATTAATCTACTAGCCAAACTTGCCA CCTTGAAAAGTTTTGCAGCACTGAATCTGAGTGGGTTAAAGCTAACCAAGCCTGTTGTTGATAGTCTCTGCCAACTTGCTAAAACATCATGTTTGTCACG GTTAATGCTTGGGAGCACTGGCATAGGAACTGATGGGGCACTACAATTAACTGCATCATTGTTCGAGGGGTCTCAAGAGTCTGTTAAACTTGACCTGTCA TACTGCGGGCTAATGCCTGCATATACTCATATGCTCAGCACCGATACTCTGATTTGTGGTATTCTTGAGCTGAACCTTGCTGGAAATCCTATTATGCAAG AGGGTACAAATGCAATGGTGTCATTGCTTACAAATCCACAATGCTGTCTGAAAGTTTTGGTCCTGAACAAATGTCAACTGGGGCTCACTGGGATTCTTCA AATGATTCAGGCACTTGCAGAAAATGACTGTCTAGAAGAGCTCCATCTTGCTGATAATGCCAACCTGGAGAAAACATATATGATACAGTATGACTCGACT AAAGGGTCGTGCTCAGACATCTTGCAACCCAACTTAAATAAATCTGAATCATCAAAGATGAGTGTGCCCAAGGAAAGCGACTCAGACAAGCAGGGTGTAT GTGTTATGAATACTGAATGTAATCAGCTTGAAGTGGCCGATAGTGAAGATGGTCCTATCAGGGCAGAAGCTGCTCCATCTGACTTTGATGACAGTTGCAC AAGCTCGTGTCAAAAGAATTCTTTGTTAGAATGCCAATTCATTCAAGAGCTTACAACTGCCATCAGTATGGCAAAGCAGCTGCAATTCATGGAATTGGGC AATAATGGCTTCACAACACAAGTTGCAGAAGCTTTGTACACTGCATGGTCATCTAGATTAGAAAATGGTTTGGCTTGGAGACACATTGAGGATCAGACAA TCCATTTCTCAATGGAAACAAACAAATGCTGTAGGGCAAAACCCTGCTGCAGAAGGGATTGA
AA sequence Show only first row Show all	>Potri.007G110800.1 pacid=42765240 polypeptide=Potri.007G110800.1.p locus=Potri.007G110800 ID=Potri.007G110800.1.v4.1 annot-version=v4.1 MPISKEEQEMQTAKRAFVNAREVGNHQEEARWANLIGDMYKNRGEYVKALKWLRIDYEISNKYLPEKQLLPTCQSIGDVYLRLHDFKHALVYQKKHLDLA KDANDLVEQQRASTQLGRTYHEMFLKSDNDHSSIRNAKKYFKSAMKLAQSLKENPHTNKSSFLKEYIDAHNNIGMIEMDLDNLEEAKKILARGLEICDEE EVDADDDGRSRLHHNLGNVYMELKVWDKAQEHIKKDIRICNRIGHCQGEAKGYINLGELHYRAQKYEEANLCYHKALDLAKSMEDEDTLVKEIGHNIGTV KEAMKVMDELKKEEQNLKKLTRSIVTARGTHHERKCLLQQNASLDCLIEKSSIILAWSKHHEFAKRKKRIASELCDKEKLGDSFLLLGESYQKLRKFKKA IKWFMKSWETYKSISNLEGQALAKINIGDVLDCDGDWMGALNAFEEGYRIAVNANLPSVQLSALENMHYSHMIRFDNEEEARRLQHEIERLKSKNTELER QNLATDCCSETDTDGDDHLSDCRSNASCSQEINKSGSARSKSLAGAEGLDDDLPLISLLRSHKNSPGTKSTQEEMHNTSTWPTEASPKCFSKTASDQQTV LSRKRIRIVLSDDEDEMHDNVDGSRERLNRCPPEDVATSNGFMGASNPAISACAFQGVSTVASKCATSSWNPNNNEESTSSYKSQSPKIVTPKGKVFRSS SNNEVVFACDLAASGSKCDVSENLTHKNNAAHLRLHNSENDDNQCIVFRIDNDLIQVDAASYLAFDKLSIESMTVELACLYYLQLPTEKRSKGLLPIVQH MKCHGRVLDSIEAFETLKGDQGNILIEVSINGWVQKRLMKLYIDCCEELSEAPNMKLLKKLYISEVEDEVIGSECELQDISVTPLLNALDTHKTVAVIDL SHNFLGNGTMEKLQQFLTSGQKYGDLTLDLHCNRFGPTALFQICECPVLFARLEVLNISGNRLTDACGSYLSTILENCRALYSLNIERCSITTRSIQKVA DALNASLVLAQLSIGYNNPVSGNAIINLLAKLATLKSFAALNLSGLKLTKPVVDSLCQLAKTSCLSRLMLGSTGIGTDGALQLTASLFEGSQESVKLDLS YCGLMPAYTHMLSTDTLICGILELNLAGNPIMQEGTNAMVSLLTNPQCCLKVLVLNKCQLGLTGILQMIQALAENDCLEELHLADNANLEKTYMIQYDST KGSCSDILQPNLNKSESSKMSVPKESDSDKQGVCVMNTECNQLEVADSEDGPIRAEAAPSDFDDSCTSSCQKNSLLECQFIQELTTAISMAKQLQFMELG NNGFTTQVAEALYTAWSSRLENGLAWRHIEDQTIHFSMETNKCCRAKPCCRRD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G18730		BRU1, MGO3, TSK	TONSOKU, MGOUN3, BRUSHY1, tetr...		Potri.007G110800 [exp]	0	1
AT4G14970			unknown protein		Potri.006G023500 [exp]	1.00	0.9410
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G156314 [exp]	2.82	0.9159
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	3.46	0.9099	Pt-CALS1.3
AT1G77720		PPK1	putative protein kinase 1 (.1)		Potri.005G173300 [exp]	5.09	0.8776
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	8.94	0.8854
AT3G09080			Transducin/WD40 repeat-like su...		Potri.006G096400 [exp]	10.19	0.9005
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	13.60	0.9003
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	18.46	0.8586
AT2G45490		ATAUR3	ataurora3 (.1)		Potri.006G080500 [exp]	18.52	0.8877
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	20.14	0.8751

Compare expression of checked genes

Potri.007G110800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.