Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 391 / 7e-125 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 308 / 9e-93 lectin protein kinase family protein (.1) AT2G19130 280 / 2e-82 S-locus lectin protein kinase family protein (.1) AT4G00340 273 / 9e-80 RLK4 receptor-like protein kinase 4 (.1) AT4G32300 268 / 6e-78 SD2-5 S-domain-2 5 (.1) AT5G24080 247 / 1e-73 Protein kinase superfamily protein (.1) AT4G21390 254 / 6e-73 B120 S-locus lectin protein kinase family protein (.1) AT1G61440 246 / 3e-70 S-locus lectin protein kinase family protein (.1) AT4G21380 247 / 4e-70 ARK3 receptor kinase 3 (.1) AT1G61480 245 / 1e-69 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G056800 [exp] 643 / 0 AT5G60900 451 / 1e-147 receptor-like protein kinase 1 (.1) Potri.005G056700 [exp] 641 / 0 AT5G60900 452 / 2e-148 receptor-like protein kinase 1 (.1) Potri.005G057000 [exp] 641 / 0 AT5G60900 456 / 5e-150 receptor-like protein kinase 1 (.1) Potri.007G111200 [exp] 591 / 0 AT5G60900 439 / 4e-143 receptor-like protein kinase 1 (.1) Potri.019G007600 [exp] 590 / 0 AT5G60900 428 / 6e-139 receptor-like protein kinase 1 (.1) Potri.019G007300 [exp] 587 / 0 AT5G60900 430 / 2e-139 receptor-like protein kinase 1 (.1) Potri.019G011302 [exp] 585 / 0 AT5G60900 430 / 1e-139 receptor-like protein kinase 1 (.1) Potri.019G011750 [exp] 577 / 0 AT5G60900 443 / 8e-145 receptor-like protein kinase 1 (.1) Potri.019G011800 [exp] 559 / 0 AT5G60900 382 / 1e-121 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024195 [exp] 486 / 9e-161 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 468 / 1e-153 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 463 / 6e-152 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 445 / 1e-144 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 428 / 5e-138 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 422 / 6e-136 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 412 / 4e-132 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 395 / 1e-125 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 307 / 5e-96 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10039315 [exp] 315 / 8e-95 AT5G24080 667 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.007G110901.2 pacid=42766263 polypeptide=Potri.007G110901.2.p locus=Potri.007G110901 ID=Potri.007G110901.2.v4.1 annot-version=v4.1 ATGGCAACTGTTTTTTTCGTGATCTTCATATACCTATTCTCTGCAGCAAAATCACAATCCAACATAACAAAAGGCTCCACTCTGTTCACCAATTCCACTC CAAACTTCTGGCCTTCTCCTTCTGGTCATTTTGCGTTCGGATTTTATCCTAGTGGCAATGGCTTCAAGGTGGGCACTTGGCTCATTGGAAGGCCAAGAAA CACAGTTGTGTGGACCGCACAGCGAAATGAACCTGCAGTCTTACCAGGGGCAAGCCTTGTTTTCACCTCAGATGGTAGGCTTGTTGTACAGAACTTTACC GAAGTTCAATTGATAGCCGAAACCCAGCAAAGGGCACAAGTTGCTGCAATGCATGATTCAGGAAACCTTTTGCTTTATGGCTCCAACATGGAAGTTGTAT GGGCTACTTTCCGATTTCCTACCAACACACTTTTGGTAACACAAGAACTGGGTCCTGACAAGATTCTATATTCAAGCAAATCTGATGCTGATGATTCTGC CGGAAATTTTAAGCTATGGATGCAAGGAGATGGAAATCTCGTTGCTTATCCATCAAAAGGTTTGCAAATGGTTAAATATTTTTATTGGTCATCACACTCT ACAAACATAGCACCGGACGTATCTTTAACTTTCGCAGCAGATAGCAGATTGTATCTTGCGAGCTCAACAGGGTTTACCATCAGGAATTTGACAGAAGGTA GACTTCCAGTCAATAAGACCACATTGTATCGAGCAACATTTGATGTTGATGGCGTTTTAAGGCTTTACCAACATCAAATGGGAACTAATGGAAGCTTGAA TTCCAATGTCTTATGGTCAGCAATAAATGGAGAAGATCGTTGCTCGGTGAAAGGCGTTTGTGGGCTTAACAGCTATTGTGCTAATAATGGCGCAGACAAT ATTGCCTGCTTATGTCCTCCTGGTTTCGATTTTGTTGATCCCAACCAGCCCAATAAGGGCTGCAAGTTAAATTTCAGCATAGATAGTGATTGTTTTCTAA AAGGAGCTAATGACAATTACATGATTTCCACGCTAGAAAACACTGTCTGGGAACGAGACGAGTACGAAGTTTTGACGCCTGTGAGTGAAGAAGCATGTTC AAAAGCTTGCCTGGAAGATTGCTATTGTGTGGTGGCCATGTTTAGGGACCAAACCTGCTTTAAGCCAAAGCTTCCATTGAGGTATGGAATGAAAAATAGC AGTAGTCCTACTAAGTCATTTGTTAAGGTTAGGTTAACCAATACAAAAAACGTCATCACAAAGAAGATTGGCAAGGAACTTCTAATTACTGGAGTGGTTT TGATTGCCTTTTCTTTAGTGATATTTGCATCATCTGGTTATCTTATATACACACATCAGATTTGGAGCTTGAAGGTGATGACAAGCCAAGATTGTCCACC GGATGTCCTTGGAGATATCAATTTGACGTCATTTAGCTATGATCAACTTGCGGTAGCTACCGATGACTTCATGGAAGAGATTGGTAAAGGGGCGTCAGGG AGGGTCTATAAAGGCTCACTGCCAGAGAATGGTGGGAAAGAAATAGCAGTGAAGAGGCTAGAGAAGTTGGTGGAAGACGGAGAACGGGAGTTCCAAAATG AAATGAAGATAATTGGGCGAACTCATCACAAGAACTTGGTGCGTTTGATTGGCTTTTGCTGCGAAGGATCACATAGGATACTTGTGTATGAGCTCATGAA AAATGGTTCATTAGGGAACCTAATCTTCAAGGACAAGAAACAACCAAGTTGGAAAGTAAGAACCAAGATTACTCTAGAGGTAGCAAAAGGGCTTCATTAT CTACACGAAGAATGCGAGACCAAGATCATCCATTGTGACATTAAGCCCCATAATGTACTCATGGATGAATCTATGTCCGCAAAAATATCAGATTTTGGAC TGTCCAAGCTCTTAAAACCTGACCAAACAAGAACATACACGATTCCAAGAGGCACAAGAGGCTATGAAGCTCCTGAGTGGCACAGAAACAACACACCTGT CACAACCAAAGCTGATGTCTATAGCTTTGGTATCTTATTGCTTGAGATTGTGTCTTGTAGGAAGAACGTGGACTTGTCAGCTCCGGATGATGAAATAATA CTAATGGACTGGGTTCAGAGGTGCTATGAAGCTGGCGAGCTAAAGAAAGTGGTCGGTGAAGTAGAGGTGAACTTGGAAGAATTGGAGAAAATGGTTAAGA TCGGATTGTGGTGTGTGCAAACAGAGACAGATTCAAGGCCAACAATGAAGCAAGTGATTTTGATGATGGATGGGACTATAGTTACACCACCTCCTCCTTC ACCAAATTCTTCTGCTAATAATTGA
AA sequence Show only first row Show all	>Potri.007G110901.2 pacid=42766263 polypeptide=Potri.007G110901.2.p locus=Potri.007G110901 ID=Potri.007G110901.2.v4.1 annot-version=v4.1 MATVFFVIFIYLFSAAKSQSNITKGSTLFTNSTPNFWPSPSGHFAFGFYPSGNGFKVGTWLIGRPRNTVVWTAQRNEPAVLPGASLVFTSDGRLVVQNFT EVQLIAETQQRAQVAAMHDSGNLLLYGSNMEVVWATFRFPTNTLLVTQELGPDKILYSSKSDADDSAGNFKLWMQGDGNLVAYPSKGLQMVKYFYWSSHS TNIAPDVSLTFAADSRLYLASSTGFTIRNLTEGRLPVNKTTLYRATFDVDGVLRLYQHQMGTNGSLNSNVLWSAINGEDRCSVKGVCGLNSYCANNGADN IACLCPPGFDFVDPNQPNKGCKLNFSIDSDCFLKGANDNYMISTLENTVWERDEYEVLTPVSEEACSKACLEDCYCVVAMFRDQTCFKPKLPLRYGMKNS SSPTKSFVKVRLTNTKNVITKKIGKELLITGVVLIAFSLVIFASSGYLIYTHQIWSLKVMTSQDCPPDVLGDINLTSFSYDQLAVATDDFMEEIGKGASG RVYKGSLPENGGKEIAVKRLEKLVEDGEREFQNEMKIIGRTHHKNLVRLIGFCCEGSHRILVYELMKNGSLGNLIFKDKKQPSWKVRTKITLEVAKGLHY LHEECETKIIHCDIKPHNVLMDESMSAKISDFGLSKLLKPDQTRTYTIPRGTRGYEAPEWHRNNTPVTTKADVYSFGILLLEIVSCRKNVDLSAPDDEII LMDWVQRCYEAGELKKVVGEVEVNLEELEKMVKIGLWCVQTETDSRPTMKQVILMMDGTIVTPPPPSPNSSANN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G110901 [exp]	0	1
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	5.74	0.6758
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Potri.006G219500 [exp]	6.48	0.6535	Pt-GPA1.2
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Potri.012G078900 [exp]	12.60	0.6908
AT4G36600			Late embryogenesis abundant (L...		Potri.005G122400 [exp]	19.59	0.6509
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014700 [exp]	20.66	0.6509
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014512 [exp]	35.70	0.6297
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128900 [exp]	46.47	0.6219
					Potri.008G030801 [exp]	57.05	0.5899
AT1G14130			2-oxoglutarate (2OG) and Fe(II...		Potri.001G455400 [exp]	57.15	0.5826	Pt-ARRO.2,2OGox14
AT2G17220		Kin3	kinase 3, Protein kinase super...		Potri.018G138700 [exp]	68.33	0.6257

Compare expression of checked genes

Potri.007G110901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.