Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 333 / 3e-103 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 300 / 4e-90 lectin protein kinase family protein (.1) AT1G11340 245 / 1e-69 S-locus lectin protein kinase family protein (.1) AT4G00340 237 / 3e-67 RLK4 receptor-like protein kinase 4 (.1) AT2G19130 236 / 5e-67 S-locus lectin protein kinase family protein (.1) AT4G21380 223 / 3e-62 ARK3 receptor kinase 3 (.1) AT4G27290 221 / 8e-62 S-locus lectin protein kinase family protein (.1) AT5G35370 222 / 1e-61 S-locus lectin protein kinase family protein (.1) AT1G61480 219 / 5e-61 S-locus lectin protein kinase family protein (.1) AT1G61550 218 / 1e-60 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G011400 [exp] 1076 / 0 AT5G60900 395 / 2e-126 receptor-like protein kinase 1 (.1) Potri.019G007400 [exp] 1075 / 0 AT5G60900 394 / 4e-126 receptor-like protein kinase 1 (.1) Potri.019G011800 [exp] 1071 / 0 AT5G60900 382 / 1e-121 receptor-like protein kinase 1 (.1) Potri.019G007700 [exp] 1065 / 0 AT5G60900 394 / 7e-126 receptor-like protein kinase 1 (.1) Potri.019G011750 [exp] 649 / 0 AT5G60900 443 / 8e-145 receptor-like protein kinase 1 (.1) Potri.019G011302 [exp] 640 / 0 AT5G60900 430 / 1e-139 receptor-like protein kinase 1 (.1) Potri.019G007300 [exp] 634 / 0 AT5G60900 430 / 2e-139 receptor-like protein kinase 1 (.1) Potri.019G007600 [exp] 630 / 0 AT5G60900 428 / 6e-139 receptor-like protein kinase 1 (.1) Potri.007G111200 [exp] 608 / 0 AT5G60900 439 / 4e-143 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024195 [exp] 405 / 4e-130 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 399 / 3e-127 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 397 / 4e-127 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 392 / 3e-125 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 382 / 4e-121 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 382 / 8e-121 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 361 / 7e-113 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 306 / 3e-92 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10032944 [exp] 304 / 2e-91 AT2G19130 371 / 1e-115 S-locus lectin protein kinase family protein (.1) Lus10006052 [exp] 301 / 2e-90 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G111100.3 pacid=42765476 polypeptide=Potri.007G111100.3.p locus=Potri.007G111100 ID=Potri.007G111100.3.v4.1 annot-version=v4.1 ATGGCTTTGGAATCATGCCTTTTGCTTCTCATACTATTTCTACTCTTTGTAGAAACAAGAACTCAACCAAACCAATGTGGTGAAATACACTTGGATTCTC AGTTATCTCCCACTTCCAACTTACTTTCATGGCTCTCCCCTTCAGGGCATTTTGCATTTGGCTTCTATCCACAAGGAAATGGATTTGCCATAGGAATATG GCTGATCGGTCAACCTGATAACACAGTCGTCTGGACTGCAAATCGAGATGATCCACCAGTCTCCTCCAATGCTACAATCCACTTCTCGGAAGAGGGTAAG CTGCTTCTTCGAACTGGGCAAGGCCGCTATGAGAAACTAATTGCTGATGTGTCTGTATCAGATTCAGCTTCAATGCTTGATTCTGGTAATTTCGTGCTTT ACAGTAATTGTAATATAATTTGGCAAAGCTTTGATTTTCCAACCGACACCATTTTAGGGGGCCAGAGTCTCAATCAGTCTCAAGAATTGGTTTCAAGTGT GTCGAGCTCAAATCACTCAAGTGGAAGGTTTTTCCTCTGGATGCAAAGGGATGGAAACCTTGTGGCCTACCCTAGAAACAGTGCTGCTCTACCTAATGAT GCTTACTGGATCAGTCATACTGATAATCACGTGGGGTTGGATCTCTCTCTCAATCACCAGGGACATCTGTTCATGAATATTTACAAATCTGAACCACAAG AACTCTTATTTGCAAACAGTTCTTATTCCTGTGAGAACAGCACTACAATTTTTCGTGCGACACTTGATGCTGATGGGATTTTCAGGCTGTATTCACACTG TTCTGAGAGTAAAACTAGCTGGAGTGTACATGTTGAGTGGTCTGCATTGAATAATCAGTGTGATGTTTATGGTTTCTGTGACTTCAACAGTTATTGCTCA GGAACGGGCACTAATTATGAATGTTCATGTTATCCTGGATTTGTTTTCAATGATCCCAATGAGAAATTCAGCGGATGCTACAGGAATGCCAGTGAAAGTT TTTGTGCAGGCAGCAAAGAAGGGAGAAAGTACCATGTCACCGGAATAGAGAATTTATTGTTTGAACGAGATCCTTATTCTGCCCAAGAGCTCGAAGAGGA AAAATGTCGTTTGTCTTGCCTGGAAGATTGTCATTGTGACGTTGCTCTATATATGGATGCGAAGTGTGAAAAGTATACTTTTCCAATTCGGTATGGTAGA GAGAATAAAACCATATCATCTATAGCCTTCTTCAAGGAAGAAACAAACCCAGGCCAGAAAATCATTATAGATAACAAGAAGAGTTTAATTATGTTTCTTG CTATAATTTTTTGCTCTATAGCTATCTTATGTTTCGGCATTGCAATCTCTACTTTCTTCGTGTACAGGGATCGAGCTTTTCTATACGAAAAGCTATCAGA AATCATAAGCTTGACCGGAGAGTTTACTCTGCAGTCATTTTCTTATGATGAGCTTGAGAAAGCTACTGATGGTTTCAGGGAAGAGTTGGGCAGGGGTTCA ATTGGAGCAGTTTATAAAGGGAAAATAAATGGGGGTGAAAAAACTGTTGCTATTAAGAGACTGGAGAAAGTTTTAGACCGAGGGGAAAAAAATTTCCAGG CCGAAATAACCATCATTGGACAAACTTACCACAGGAACTTGGTTCGACTGCTTGGTTTTTGTTTTGACCACTCTAGGAGGCTTCTCGTCTATGAGTACTT GAAGAACGGCACACTTGCAGATCTTCTGTTCACGGCTGAGAGGCGCCCAGTTTGGAAAGAAAGAATAAGGATTGCTCTAGACATAGCTCGAGGAATTCTC TATCTACATGAAGAGTGTGAGGCCTGCATCATCCATGGCAATATAACCCCTCAAAACATTCTCATGGATGATTCTTGGATAGCAAAAATCTCCGATTTTG GGTTATCAAAGCTATTGTATCCGGACAAGGTAAGAAGCTCCATGGCCCTCCTCTCACATAGTAGAGGGCACTTGGCACCAGAATGGCAGAACAATGCCTT GATATCAATAAAAGCTGATATTTACAGCTTTGGAGTTGTGCTACTGGAAATCACCTGTTGTAGAAGCAGTATAAAAGCAGACGTTTCAACAGAAGATGAA ATGATTCTTTCCAGGTGGGCATATCAATGCTTCGTAGCTGGACAGTTGGATATGCTTCTAAAGGATGAACATGTAGAATACGAGTCATTGGAATGA
AA sequence Show only first row Show all	>Potri.007G111100.3 pacid=42765476 polypeptide=Potri.007G111100.3.p locus=Potri.007G111100 ID=Potri.007G111100.3.v4.1 annot-version=v4.1 MALESCLLLLILFLLFVETRTQPNQCGEIHLDSQLSPTSNLLSWLSPSGHFAFGFYPQGNGFAIGIWLIGQPDNTVVWTANRDDPPVSSNATIHFSEEGK LLLRTGQGRYEKLIADVSVSDSASMLDSGNFVLYSNCNIIWQSFDFPTDTILGGQSLNQSQELVSSVSSSNHSSGRFFLWMQRDGNLVAYPRNSAALPND AYWISHTDNHVGLDLSLNHQGHLFMNIYKSEPQELLFANSSYSCENSTTIFRATLDADGIFRLYSHCSESKTSWSVHVEWSALNNQCDVYGFCDFNSYCS GTGTNYECSCYPGFVFNDPNEKFSGCYRNASESFCAGSKEGRKYHVTGIENLLFERDPYSAQELEEEKCRLSCLEDCHCDVALYMDAKCEKYTFPIRYGR ENKTISSIAFFKEETNPGQKIIIDNKKSLIMFLAIIFCSIAILCFGIAISTFFVYRDRAFLYEKLSEIISLTGEFTLQSFSYDELEKATDGFREELGRGS IGAVYKGKINGGEKTVAIKRLEKVLDRGEKNFQAEITIIGQTYHRNLVRLLGFCFDHSRRLLVYEYLKNGTLADLLFTAERRPVWKERIRIALDIARGIL YLHEECEACIIHGNITPQNILMDDSWIAKISDFGLSKLLYPDKVRSSMALLSHSRGHLAPEWQNNALISIKADIYSFGVVLLEITCCRSSIKADVSTEDE MILSRWAYQCFVAGQLDMLLKDEHVEYESLE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G111100 [exp]	0	1
AT5G56980			unknown protein		Potri.006G152200 [exp]	3.46	0.8949
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147500 [exp]	4.89	0.8930
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.003G041700 [exp]	12.84	0.8878
					Potri.019G110602 [exp]	13.41	0.8394
					Potri.012G121504 [exp]	14.00	0.8471
					Potri.001G078000 [exp]	14.07	0.8557
					Potri.002G190900 [exp]	18.33	0.8704
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.003G041600 [exp]	19.59	0.8773
					Potri.016G028800 [exp]	21.16	0.7934
					Potri.012G120860 [exp]	22.04	0.8587

Compare expression of checked genes

Potri.007G111100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.