Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60900 439 / 5e-143 RLK1 receptor-like protein kinase 1 (.1) AT1G34300 338 / 9e-104 lectin protein kinase family protein (.1) AT4G00340 304 / 5e-91 RLK4 receptor-like protein kinase 4 (.1) AT5G24080 288 / 1e-88 Protein kinase superfamily protein (.1) AT2G19130 292 / 2e-86 S-locus lectin protein kinase family protein (.1) AT5G35370 271 / 2e-78 S-locus lectin protein kinase family protein (.1) AT1G11340 260 / 2e-74 S-locus lectin protein kinase family protein (.1) AT4G32300 258 / 3e-74 SD2-5 S-domain-2 5 (.1) AT1G65790 244 / 3e-69 ARK1 receptor kinase 1 (.1) AT1G65800 244 / 4e-69 ARK2 receptor kinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G007300 [exp] 1115 / 0 AT5G60900 430 / 2e-139 receptor-like protein kinase 1 (.1) Potri.019G011302 [exp] 1114 / 0 AT5G60900 430 / 1e-139 receptor-like protein kinase 1 (.1) Potri.019G007600 [exp] 1111 / 0 AT5G60900 428 / 6e-139 receptor-like protein kinase 1 (.1) Potri.019G011750 [exp] 1101 / 0 AT5G60900 443 / 8e-145 receptor-like protein kinase 1 (.1) Potri.019G011400 [exp] 662 / 0 AT5G60900 395 / 2e-126 receptor-like protein kinase 1 (.1) Potri.019G007400 [exp] 661 / 0 AT5G60900 394 / 4e-126 receptor-like protein kinase 1 (.1) Potri.019G011800 [exp] 658 / 0 AT5G60900 382 / 1e-121 receptor-like protein kinase 1 (.1) Potri.019G007700 [exp] 656 / 0 AT5G60900 394 / 7e-126 receptor-like protein kinase 1 (.1) Potri.005G057000 [exp] 643 / 0 AT5G60900 456 / 5e-150 receptor-like protein kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024195 [exp] 491 / 4e-162 AT5G60900 367 / 3e-114 receptor-like protein kinase 1 (.1) Lus10031805 [exp] 486 / 2e-160 AT5G60900 530 / 5e-178 receptor-like protein kinase 1 (.1) Lus10004365 [exp] 479 / 3e-157 AT5G60900 545 / 0.0 receptor-like protein kinase 1 (.1) Lus10031230 [exp] 478 / 6e-157 AT5G60900 388 / 4e-123 receptor-like protein kinase 1 (.1) Lus10031231 [exp] 476 / 1e-156 AT5G60900 536 / 2e-180 receptor-like protein kinase 1 (.1) Lus10010992 [exp] 465 / 2e-152 AT5G60900 540 / 0.0 receptor-like protein kinase 1 (.1) Lus10036639 [exp] 439 / 6e-142 AT5G60900 394 / 1e-125 receptor-like protein kinase 1 (.1) Lus10042940 [exp] 420 / 1e-134 AT5G60900 381 / 1e-120 receptor-like protein kinase 1 (.1) Lus10030400 [exp] 339 / 5e-108 AT5G60900 356 / 1e-115 receptor-like protein kinase 1 (.1) Lus10006052 [exp] 335 / 2e-102 AT1G34300 961 / 0.0 lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF01453 [poplar] [flax] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Potri.007G111200.1 pacid=42766372 polypeptide=Potri.007G111200.1.p locus=Potri.007G111200 ID=Potri.007G111200.1.v4.1 annot-version=v4.1 ATGGCTTCAGCCTATTCTGCTTTGTTGCTTGTGTTTTTCTTTTGGATTTACGAACCTGTAAGTCCCCAGCAGAGCCGGACACACTCGATAGAATTAGGTT CTTCACTCTCCACCAATTTCCCACCAACTTCATGGCGCTCCCCTTCTGGTCTATTTGCTTTTGGGTTCTACCGACAGGGCAGCGGCTTCATAGTGGGAAT TTGGTTGGCGAGTAAGCCAGATGCTACATTCACCTGGACAATAAACCGAGATGTCCCTCATGTGTCATCAAATGCTACATTGGAGTTGACCAAAAAAGGT AAGCTCCTTTTGAGAAGGCATAGAAATAATGCAACTAATGAAGAGATATTCATTGCTAATTTTAAAGGGTCAGCTTCATATGCTCAAATGCTTGATTCTG GGAATTTTGTGCTCTACAATGAACGTTCCGAAGCAATATGGGAAAGTTTTAGCTTTCCTACGGATACTATATTAGGAGGACAGAATCTATACAAAGGGGG TGAACTGTTTTCCCGTGCATCTGCAATCGATTTGTCCACGGGAAGGTTTCATCTTAAAATGCAAGATGATGGGAACCTTGTTTTGTATCCCGTAGACACT CTAGACCTTCCACTGGATGCGTATTGGAGCTCTGAAACTAATGGTAATCCTGGTATCCATCTAATTTTAACTGGTACAGGAGATCTGTTACTCGTTAACC AAACCTTGCACAAAATCAAAACCGTGACATCCTCTGGTTCAGAATCGAACAGCACCTCAATTATCTACCGGGCAACATTGGATTATGATGGAATTTTCCG ATTGTATTCCCATAACTTCGATGGCGTAGCTAAGTACATCATTTCCCTTATGTGGTATGTACCATGGATACAGTGTGAAGTGAGAGGTTTCTGTGGATTC AACAGCTACTGCACCATGAATGATGATGATCAACCTGACTGTCTTTGTCTTCCTGGAACTGCTTACGTTGATCCCAACCAGAGATTTCGTGGATGTGAGA GAGACTACAACGAAGGATCCTGCAAACATACAAACGAAATGTCATCGTTATATAACATTACTGTTATGGACCAAATTGCGTGGGATGACAATGCTTATTT TCAAGCATCAATGTCAGAGGAAGGTTGCAGAAAGTCCTGTTTGGAGGATTGTAACTGTGCTGGTGCGCTGTACGAAGCAGGGAACTGCAAGAAACAGAAG TACCCAGTGAAATATGCTTCGAAAACGCAATATCAATCATCAAAATCTTTCTTCAAGGTGGCCTTGGAGAGTATCAAAAGCAGCAACCATTCCAGTGCCA TAGGAATGGTGCCTTCAGTAATCCAGAGGACAAGCAAGAAGGCAGTGGTACTAATTCTTGTTATGAGTTTAGCCTTCATCACATGGTGTTTAGTCGCCCT AGCAATCTCTGGCCTTTTCATCTTTAAGTCGAGAGTCATTAAGGGTAGAATGCAGACGGAAAGTGGAAATTTTGGCTTGGCCCGTGAGCTCACTCTGAGA GCATTCTCTTATCGTGAGCTTAAGAAAGCAACCAAGGGTTTCAAAGAAGAGTTGGGGAAAGGATCTTCTGGAGCTGTTTACAAAGGGACTTTATACAAAG GTAAAAAGGCTATTGCGGTGAAGAGGCTGGAGAAGGTGATCAGTGAAAGTGAAAGGGAGTTCCTGACGGAGATGCGTTCAATTGGAAAAACTCATCATAA GAATTTGGTTCGGCTTCTTGGCTACTGCACTGAGGGTTCCCATAGGCTCCTAGTATATGAATACATGAGCAATGGGTCACTTGCAAATCTTCTCTTCCGA AATGAAAGGATTCCAGATTGGAGCGACAGAGTGAAAATTGCTCTAGATATTGCTAAAGGGATCTTATATCTGCATGAAGAGTGTGAAGCACCAATCATGC ATTGTGATATAAAGCCTCAAAACATTCTGATGGATGATTTTTGGACTGCTAAGATCTCTGATTTTGGGCTGGCAAAATTGTTAGTGCCTGATCAAACAAG AACCCTGACTGTAGCCAGAGGGACACCAGGTTATATGGCACCTGAATGGACTAAGATCAGCACTCCAACATCAGTGAAGGTAGATGTTTACAGTTATGGA GTTGTGCTCTTGGAAATTGTTTTCTGCAGGAGAAACATGGAAATCAACGTATCAAAACCAGAGGAAGTTCTACTTTCTAAATGGGCATACGAGCTTTTGG TTGCAAGAGAATTTGACAGGCTTGATCTTGGTGAAGATGTAGACAGGCAGAAATTGGAGAAAATGGTTATGATCGGCATTTGGTGTATTCAAGATGAACC AGGTCTCCGCCCTTCTATGAAGACTGTTGTGATGATGTTAGAAGGAATTACTGATGTATCTGTTCCTCCACACCCAACTTCAGCTTCGGCATAA
AA sequence Show only first row Show all	>Potri.007G111200.1 pacid=42766372 polypeptide=Potri.007G111200.1.p locus=Potri.007G111200 ID=Potri.007G111200.1.v4.1 annot-version=v4.1 MASAYSALLLVFFFWIYEPVSPQQSRTHSIELGSSLSTNFPPTSWRSPSGLFAFGFYRQGSGFIVGIWLASKPDATFTWTINRDVPHVSSNATLELTKKG KLLLRRHRNNATNEEIFIANFKGSASYAQMLDSGNFVLYNERSEAIWESFSFPTDTILGGQNLYKGGELFSRASAIDLSTGRFHLKMQDDGNLVLYPVDT LDLPLDAYWSSETNGNPGIHLILTGTGDLLLVNQTLHKIKTVTSSGSESNSTSIIYRATLDYDGIFRLYSHNFDGVAKYIISLMWYVPWIQCEVRGFCGF NSYCTMNDDDQPDCLCLPGTAYVDPNQRFRGCERDYNEGSCKHTNEMSSLYNITVMDQIAWDDNAYFQASMSEEGCRKSCLEDCNCAGALYEAGNCKKQK YPVKYASKTQYQSSKSFFKVALESIKSSNHSSAIGMVPSVIQRTSKKAVVLILVMSLAFITWCLVALAISGLFIFKSRVIKGRMQTESGNFGLARELTLR AFSYRELKKATKGFKEELGKGSSGAVYKGTLYKGKKAIAVKRLEKVISESEREFLTEMRSIGKTHHKNLVRLLGYCTEGSHRLLVYEYMSNGSLANLLFR NERIPDWSDRVKIALDIAKGILYLHEECEAPIMHCDIKPQNILMDDFWTAKISDFGLAKLLVPDQTRTLTVARGTPGYMAPEWTKISTPTSVKVDVYSYG VVLLEIVFCRRNMEINVSKPEEVLLSKWAYELLVAREFDRLDLGEDVDRQKLEKMVMIGIWCIQDEPGLRPSMKTVVMMLEGITDVSVPPHPTSASA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.007G111200 [exp]	0	1
AT4G17980	NAC	ANAC071	NAC domain containing protein ...		Potri.003G089800 [exp]	2.00	0.9139
AT3G18670			Ankyrin repeat family protein ...		Potri.015G119800 [exp]	4.24	0.8923
AT4G14860	OFP	ATOFP11	ovate family protein 11 (.1)		Potri.005G211300 [exp]	6.92	0.8721
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120000 [exp]	7.48	0.8892
AT5G25810	AP2_ERF	TNY, TINY	TINY, Integrase-type DNA-bindi...		Potri.001G187500 [exp]	19.67	0.8776
					Potri.014G057850 [exp]	22.62	0.8519
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.001G252104 [exp]	23.02	0.7841
AT5G64700			nodulin MtN21 /EamA-like trans...		Potri.019G004100 [exp]	24.39	0.8807
AT2G36540			Haloacid dehalogenase-like hyd...		Potri.010G244200 [exp]	26.98	0.8583
AT1G53440			Leucine-rich repeat transmembr...		Potri.010G155600 [exp]	28.16	0.8086

Compare expression of checked genes

Potri.007G111200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.