Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCHX23.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05580 645 / 0 ATCHX23 cation/H+ exchanger 23, cation/H+ exchanger 23, cation/H+ exchanger 23 (.1), cation/H+ exchanger 23 (.2) AT2G13620 602 / 0 ATCHX15 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) AT2G31910 572 / 0 ATCHX21 cation/H+ exchanger 21, cation/H+ exchanger 21, cation/H+ exchanger 21 (.1) AT4G23700 438 / 5e-141 ATCHX17 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) AT3G17630 429 / 9e-138 ATCHX19 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) AT5G41610 428 / 3e-137 ATCHX18 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) AT1G64170 367 / 3e-114 ATCHX16 cation/H+ exchanger 16, cation/H+ exchanger 16, cation/H+ exchanger 16 (.1) AT3G53720 357 / 7e-110 ATCHX20 cation/H+ exchanger 20, cation/H+ exchanger 20, cation/H+ exchanger 20 (.1) AT1G06970 340 / 7e-104 ATCHX14, CHX14 cation/hydrogen exchanger 14 (.1) AT2G30240 305 / 6e-91 ATCHX13 CATION/H+ EXCHANGER 13, Cation/hydrogen exchanger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G105200 [exp] 606 / 0 AT2G13620 1112 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.004G131300 [exp] 539 / 2e-179 AT2G13620 640 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.010G189100 [exp] 532 / 5e-177 AT2G13620 595 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.007G102700 [exp] 488 / 1e-160 AT2G13620 525 / 3e-175 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Potri.001G096320 [exp] 464 / 2e-151 AT5G41610 1069 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.013G142301 [exp] 463 / 7e-151 AT5G41610 1067 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.003G134900 [exp] 452 / 8e-147 AT5G41610 989 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Potri.010G004800 [exp] 428 / 4e-137 AT3G17630 1091 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1) Potri.010G005200 [exp] 426 / 1e-136 AT3G17630 1101 / 0.0 cation/H+ exchanger 19, cation/H+ exchanger 19, cation/H+ exchanger 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030013 [exp] 598 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10035312 [exp] 592 / 0 AT2G13620 1160 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10039138 [exp] 539 / 1e-178 AT2G13620 573 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017540 [exp] 456 / 2e-147 AT5G41610 1013 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10040881 [exp] 442 / 8e-142 AT2G13620 572 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10004932 [exp] 439 / 6e-141 AT2G13620 568 / 0.0 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10032332 [exp] 422 / 5e-135 AT4G23700 1030 / 0.0 cation/H+ exchanger 17, cation/H+ exchanger 17, cation/H+ exchanger 17 (.1) Lus10015268 [exp] 411 / 2e-129 AT2G13620 507 / 1e-166 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1) Lus10017541 [exp] 376 / 2e-115 AT5G41610 800 / 0.0 cation/H+ exchanger 18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, cation/H+ exchanger 18 (.1), cation/H+ exchanger 18 (.2) Lus10013794 [exp] 318 / 6e-97 AT2G13620 332 / 1e-102 CATION/H+ EXCHANGER 15, cation/hydrogen exchanger 15 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [poplar] [flax] CPA_AT PF00999 [poplar] [flax] Na_H_Exchanger Sodium/hydrogen exchanger family
Representative CDS sequence Show only first row Show all	>Potri.007G111400.1 pacid=42766362 polypeptide=Potri.007G111400.1.p locus=Potri.007G111400 ID=Potri.007G111400.1.v4.1 annot-version=v4.1 ATGGCTGAATCTGGATATTTAGTAAATCGTACCAAGGATGGTTCGGAAGCATGTTACTACGTAAATCAAACTGGTGGCAATTATTTCCAAAGTACAAGTG CTTTGACGACATCCCTCCCTCTCTTTGTCCTCCAACTATCGGTTGTCCTGTTCACCACTCGCCTTCTCCTCTTGATCCTCAGGCCTCTGCGACAACCCAG CATAGTTGCTCTTATAACTGCTGGGGTGTTGCTAGGCCCATCAGCACTTGGAACTACCCCGTTGTTTTTCGATCACGTCCTTCCTTTTAAGGCTGTCAAG GTGTTGGAAACATTTGCAAACTTGGCACTCGTTTACTACATGTTCCTATTTGGGTTAGAAATGGACCTAAAACCCATCATGAACAGTGGATCGGAGGCTA TTCGCATCGCCATTTCTGGAATTCTGATTCCACTTGGCTTTGGGTTTGGCTTATTTTATCTATTACAACTGCTTGATAGTGATGCAAAGGAAATCAGCAG CTTTAAGGGCTCCATATTCTGGGCTATTACTCTCACTGCTACCAACTTCCCTGACGTTACTCAGGTTCTCACAGACCTCAAGCTCCTTCGCACCGATATG GGAAGATTGGCCATGTCTTCAGCTGTTAGCAGTGACTTCTTTACTTGGATTCTTCTTGTGGTTGCAATGTCATTGCTCAATGCTCACCCATATTATGTTT TGCCATTTATCCTTGCTTTCGTTTTACTCTGTTGTTTTGTGATCCGTCCGGTAATCTCAAAGATAGCTAACCATGCTGTCAAAGGAGACGACTTCACTGA GCAACATATATGGTTTGTTTTGGGTTGGATTGTGTTTTTCGGATTCATCACTGATGCTTTTGGTTTGCATTCTATGGTTGGTAGTTTCATGTTAGGAGTT ATTATGCCTCGTCGAGATGTTATCAGAATGAAACTAATGGAAAGGCTTGATGATTTTGTCTCTGGGATTATGATGCCCCTCTTCTTCTTAACCTCAGGGA CCCGAACTGATGCTGGTTTTCTGCTGAAAGAAACTCCATGGTATGCAATATTTATAATCATATTCCTTAGTTTTGGAGCAAAGATACTGAGCACATTGCT CGTCTTTCTGCTCCACAACAAGCCATTGGAGGATGGTTTTGCTCTTGGAGTAATAATGAACACTAAAGGAGTTATGTCGATCATTATCATTAATGCCGGG CGGAATATTAAGGTTCTAAACAACCAAACATTTACCTTAATGGTGTTTTCAGCCTTGGCCATGACTTGTTTGGTGGAGCCAATAGTTGCTGCCACATATA AGCCTAGAAAAAAATTGCTTAGATACAAGCACAGGACCATTGAGAGTGTACTGGTAAATGGGGTAGAATTTAAAATCCTTGCATGTGTTCTTTCAAATCG TGATGCACCATGCATGATTAGCCTCCTTGAAGCCTCTAATGCCGGCCCAGACTTCCCTATCTGTGTCATCGCCGTCCACTTGGTAGAGCTCACTGGACGG AACACAGCGATGCTAATTGTTCATGACCACTCCATGACAAGCATGAGCAATCCTATCCGAGCAAAATCAGAATCGGACCAAATTATCTTTGCTTTTAAAT CATACGAGAAGAGAAACGGAGCTGTGTCGGTTCAAACAATCACTGCAATTTCACCTTATGAGAATATGCATGAGGATATTTGCAGCCTTGCATTGGACAA GCGAGTTTCCCTCATCATCATACCATTCCAAACAGTCTTAACTGCAGACGGCCGAGTAGAGGATGCAAAATCGACTTTTCCAGCTATGAACCAATATGTG CTGGAAAACGCAACGTGTTCTGTGGGTCTACTGGTTGATCGTGGACTCGGTTCCATCATGCAAACAGGTCCCGCAAGGAACAGTTCTAGTTCAAAAGGGC ACCGAATTGCTATGATCTTCATTGGTGGCCCTGATGACAGGGAGGCATTGGCTTATGCGTGGCGAATGGCAGGGCATCCTGGCATAAGTTTAACGGTGCT TCGATTTCTTCCAGGTAGAATAGCAGCACAATCCACTCCAGAACACGGCTCAAACAGTCATGATGAGTTATTCAGTTCCATGACGATTGAGGAGAGGGAA AAGAGGCTTGATGATGATTATACATATGAGTTCATGTTCAAGACTCTTGATGATGAGTCCATTACTTACACAGAGAAAGTGGTGAATAATGGGGATGAAA CTCTTGCTGAAATTAGACGAAATGATGCAGATTTTGATCTCTATATAGTTGGAAGAGGGGAGAAAACACGATCAGTGCTCACATCAGGGTTATCAGACTG GAATAGCTGTCAGGAATTGGGAACCATGGGGGATACACTGGCTTCATCAAATTTCGCGTCGCATGCATCAGTTCTTGTGGTGCAACAATACGTACCCAAA AATTATATAGCAAACCCTCATGGATTTTCAGCAAGTCTTGGCTCAACAACTTGGCGACCACTAATGGTTGGTGACCAGGTTTCCTTTGGCAATACTACTA GCATTTCACACCAATATGTTTATGACCAAGAGGAAGATGATGACGATGATTACGATTACGATTACGATTACGATCGTAAATAA
AA sequence Show only first row Show all	>Potri.007G111400.1 pacid=42766362 polypeptide=Potri.007G111400.1.p locus=Potri.007G111400 ID=Potri.007G111400.1.v4.1 annot-version=v4.1 MAESGYLVNRTKDGSEACYYVNQTGGNYFQSTSALTTSLPLFVLQLSVVLFTTRLLLLILRPLRQPSIVALITAGVLLGPSALGTTPLFFDHVLPFKAVK VLETFANLALVYYMFLFGLEMDLKPIMNSGSEAIRIAISGILIPLGFGFGLFYLLQLLDSDAKEISSFKGSIFWAITLTATNFPDVTQVLTDLKLLRTDM GRLAMSSAVSSDFFTWILLVVAMSLLNAHPYYVLPFILAFVLLCCFVIRPVISKIANHAVKGDDFTEQHIWFVLGWIVFFGFITDAFGLHSMVGSFMLGV IMPRRDVIRMKLMERLDDFVSGIMMPLFFLTSGTRTDAGFLLKETPWYAIFIIIFLSFGAKILSTLLVFLLHNKPLEDGFALGVIMNTKGVMSIIIINAG RNIKVLNNQTFTLMVFSALAMTCLVEPIVAATYKPRKKLLRYKHRTIESVLVNGVEFKILACVLSNRDAPCMISLLEASNAGPDFPICVIAVHLVELTGR NTAMLIVHDHSMTSMSNPIRAKSESDQIIFAFKSYEKRNGAVSVQTITAISPYENMHEDICSLALDKRVSLIIIPFQTVLTADGRVEDAKSTFPAMNQYV LENATCSVGLLVDRGLGSIMQTGPARNSSSSKGHRIAMIFIGGPDDREALAYAWRMAGHPGISLTVLRFLPGRIAAQSTPEHGSNSHDELFSSMTIEERE KRLDDDYTYEFMFKTLDDESITYTEKVVNNGDETLAEIRRNDADFDLYIVGRGEKTRSVLTSGLSDWNSCQELGTMGDTLASSNFASHASVLVVQQYVPK NYIANPHGFSASLGSTTWRPLMVGDQVSFGNTTSISHQYVYDQEEDDDDDYDYDYDYDRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G05580		ATCHX23	cation/H+ exchanger 23, cation...		Potri.007G111400 [exp]	0	1	ATCHX23.1
					Potri.010G080267 [exp]	3.00	0.6967
AT4G00755			F-box family protein (.1.2)		Potri.014G076200 [exp]	4.00	0.5746
AT5G18520			Lung seven transmembrane recep...		Potri.013G049500 [exp]	27.11	0.4990
AT1G22110			structural constituent of ribo...		Potri.005G169900 [exp]	27.12	0.5061
AT1G01280		CYP703A2	"cytochrome P450, family 703, ...		Potri.014G099600 [exp]	31.30	0.5029
AT1G21280			unknown protein		Potri.006G249450 [exp]	31.74	0.4981
AT4G27330	NZZ	NZZ, SPL	NOZZLE, sporocyteless (SPL) (....		Potri.011G125600 [exp]	43.71	0.4857
AT2G27500			Glycosyl hydrolase superfamily...		Potri.004G097400 [exp]	48.98	0.5293
AT4G16447			unknown protein		Potri.011G086300 [exp]	53.66	0.4649
AT3G20190			Leucine-rich repeat protein ki...		Potri.004G170274 [exp]	62.96	0.4733

Compare expression of checked genes

Potri.007G111400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.