Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G12680 492 / 3e-172 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT1G12580 241 / 1e-73 PEPKR1 phosphoenolpyruvate carboxylase-related kinase 1 (.1) AT4G04720 238 / 2e-72 CPK21 calcium-dependent protein kinase 21 (.1) AT1G61950 233 / 2e-70 CPK19 calcium-dependent protein kinase 19 (.1) AT2G38910 233 / 3e-70 CPK20 calcium-dependent protein kinase 20 (.1) AT1G76040 233 / 4e-70 CPK29 calcium-dependent protein kinase 29 (.1.2) AT3G10660 232 / 3e-69 ATCPK2, CPK2 calmodulin-domain protein kinase cdpk isoform 2 (.1) AT5G04870 231 / 3e-69 AK1, ATCPK1, CPK1 calcium dependent protein kinase 1 (.1) AT5G12180 229 / 4e-69 CPK17 calcium-dependent protein kinase 17 (.1) AT1G50700 228 / 1e-68 CPK33 calcium-dependent protein kinase 33 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048400 [exp] 799 / 0 AT1G12680 471 / 7e-164 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.005G251500 [exp] 542 / 0 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.012G134600 [exp] 243 / 3e-74 AT1G12580 569 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Potri.010G244800 [exp] 235 / 5e-71 AT5G04870 899 / 0.0 calcium dependent protein kinase 1 (.1) Potri.001G274700 [exp] 233 / 2e-70 AT5G12180 909 / 0.0 calcium-dependent protein kinase 17 (.1) Potri.016G065700 [exp] 234 / 3e-70 AT2G38910 892 / 0.0 calcium-dependent protein kinase 20 (.1) Potri.004G015500 [exp] 231 / 5e-70 AT4G04720 797 / 0.0 calcium-dependent protein kinase 21 (.1) Potri.008G014700 [exp] 231 / 2e-69 AT5G04870 922 / 0.0 calcium dependent protein kinase 1 (.1) Potri.003G120800 [exp] 229 / 3e-69 AT1G12580 605 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041132 [exp] 486 / 5e-170 AT1G12680 608 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10036464 [exp] 486 / 6e-170 AT1G12680 607 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Lus10015009 [exp] 237 / 3e-72 AT1G12580 549 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10038889 [exp] 235 / 1e-71 AT1G12580 555 / 0.0 phosphoenolpyruvate carboxylase-related kinase 1 (.1) Lus10008958 [exp] 233 / 5e-71 AT5G04870 877 / 0.0 calcium dependent protein kinase 1 (.1) Lus10028862 [exp] 234 / 3e-70 AT5G04870 940 / 0.0 calcium dependent protein kinase 1 (.1) Lus10021531 [exp] 231 / 2e-69 AT3G20410 831 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10032640 [exp] 229 / 4e-69 AT3G20410 790 / 0.0 calmodulin-domain protein kinase 9 (.1) Lus10029547 [exp] 228 / 5e-69 AT1G35670 790 / 0.0 calcium-dependent protein kinase 2 (.1) Lus10015992 [exp] 229 / 1e-68 AT2G38910 880 / 0.0 calcium-dependent protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.007G112400.5 pacid=42765028 polypeptide=Potri.007G112400.5.p locus=Potri.007G112400 ID=Potri.007G112400.5.v4.1 annot-version=v4.1 ATGGAATCCTTAAGAAGGAAGAGGAAGGGCTTAGAAATTTTGCCTTCATTTGGTGAGTCCCTTGCTCCATTAACAGTGATTTTGCCGCGCTTGTCATTGG GAGATTATTCGAGGCAAAGGAAGAAGTATAAGGAAGATGAGGATAAAGAAGCTGTTGGTTCTAGTACAAGTGTAGTTAAAGGTGTTTTCACTGCTCCACC TTGTAGGAGTGTCTCTGCAGATCCACCTTGTAGGGGTCTTAAGAGGAAAATTGGGTGTATTGATGTGGCAACTCAGTTGGGCAGGAAGAAAAAAATTGAG AAAGAGTATGACTTGGGTGCGTCTATTGGGCAAGGGAAGTTTGGGTCGGTGGTTTTGTGTCGAAGTAAAGTGACTGGAGAAGAGTTTGCTTGCAAAATGC TGCGCAAGGGAGAGGAGCTTGTGCATCGGGAAGTGGAGATTATGCAGCACCTCTCAGGTCATCCTGGTGTGGTGACATTGAAGGCAGTGTATGAGGACTT AGAATCCTTTTATCTTGTCATGGAGCTCTGCACCGGGGGACGATTGCTCGACCAGATGGCTAAGCAAAGGCAGTATCCAGAGCATAGGGCTGCTAATATA CTCAAGGAAGTGGTTTCAGTTATCAAATATTGCCATGACATGGGAGTTGTTCATCGGGACATAAAACCGGAGAATATCCTCCTTACAGCCTCTGGGCTGA TGAAGCTTGCGGACTTTGGCCTAGCTGTGAGGATGTCAAATGGTCAGAGCCTCAGAGGTGCGGTTGGAAGTCCTGCCTATGTTGCACCAGAAGTTTTAGC TGGTGATTATTCAGAAAAGGTTGATATCTGGAGTGCTGGTGTCCTCCTTCATACCTTGTTGGTTGGCGTGCTTCCATTTCAGGGTGATTCATTGGATGCT GTCTTTGAGGCTATTAAGAAGGTCAACCTTGACTTCAAAAGTGAATTATGGGAATCAGTATCTCAACCTGCACGGGAGTTAGTTGCTCATATGCTGACAA GGGATGTTTCAGCAAGACTAACTGCTGATGAAATACTAGGACATCCATGGATCTTGTTCTATACAGAACCAACACGGAAGGAACTTACCCAAAAACCAAA GTTTCAAGACCATGCAACACTGACTTCTCAACAACTAACTGTCACAACTAGGTTGGAGTCAGAGAGATACAGGATAACAGCCAGTGGTTTTCTCAGTGAT GACTCTAGCCTAATTTTATCATCTGATGGTTCTAGGTCAAGGTTGGAAGAGCAAGACTGTGGATTGGTTGATGCTCTCACCGTGGCAATATCACGTGTGA GGATATCTGAACCAAAGAGAAGCAGGTTGTGTTGGCCCACAAGCCCTATCCGACAAGAGTGTTCCTCTAACATTAAGATTAACAATCTCTGTACAGCATT TTGA
AA sequence Show only first row Show all	>Potri.007G112400.5 pacid=42765028 polypeptide=Potri.007G112400.5.p locus=Potri.007G112400 ID=Potri.007G112400.5.v4.1 annot-version=v4.1 MESLRRKRKGLEILPSFGESLAPLTVILPRLSLGDYSRQRKKYKEDEDKEAVGSSTSVVKGVFTAPPCRSVSADPPCRGLKRKIGCIDVATQLGRKKKIE KEYDLGASIGQGKFGSVVLCRSKVTGEEFACKMLRKGEELVHREVEIMQHLSGHPGVVTLKAVYEDLESFYLVMELCTGGRLLDQMAKQRQYPEHRAANI LKEVVSVIKYCHDMGVVHRDIKPENILLTASGLMKLADFGLAVRMSNGQSLRGAVGSPAYVAPEVLAGDYSEKVDIWSAGVLLHTLLVGVLPFQGDSLDA VFEAIKKVNLDFKSELWESVSQPARELVAHMLTRDVSARLTADEILGHPWILFYTEPTRKELTQKPKFQDHATLTSQQLTVTTRLESERYRITASGFLSD DSSLILSSDGSRSRLEEQDCGLVDALTVAISRVRISEPKRSRLCWPTSPIRQECSSNIKINNLCTAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.007G112400 [exp]	0	1
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Potri.015G126800 [exp]	3.16	0.7837	CBP.1
AT5G17410			Spc97 / Spc98 family of spindl...		Potri.010G180700 [exp]	3.46	0.7625
AT1G26100			Cytochrome b561/ferric reducta...		Potri.008G115200 [exp]	19.13	0.7692
AT1G60900			U2 snRNP auxilliary factor, la...		Potri.004G040900 [exp]	19.23	0.6328
AT2G42910			Phosphoribosyltransferase fami...		Potri.005G202100 [exp]	32.55	0.6214
AT1G49480	B3	REM19, RTV1	related to vernalization1 1 (....		Potri.004G147200 [exp]	33.36	0.6950
AT5G24340			3'-5' exonuclease domain-conta...		Potri.015G009500 [exp]	35.56	0.6517
AT2G36985		DVL16, ROT4	ROTUNDIFOLIA4, DEVIL 16, DVL f...		Potri.010G226250 [exp]	36.00	0.7003
AT5G11020			Protein kinase superfamily pro...		Potri.006G260100 [exp]	41.71	0.6902
AT2G38430			unknown protein		Potri.019G029900 [exp]	42.90	0.7168

Compare expression of checked genes

Potri.007G112400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.