Plant FIBer expression Database

Potri.007G112500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G33590 564 / 0 unknown protein
AT4G33600 560 / 0 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G048300
[exp]
866 / 0 AT4G33600 573 / 0.0 unknown protein
Potri.002G102300
[exp]
508 / 6e-178 AT4G33600 464 / 3e-161 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001351
[exp]
560 / 0 AT4G33590 519 / 0.0 unknown protein
Lus10041131
[exp]
447 / 2e-154 AT4G33590 443 / 3e-153 unknown protein
Lus10036462
[exp]
231 / 2e-73 AT4G33590 218 / 5e-69 unknown protein
Lus10036463
[exp]
171 / 7e-51 AT4G33590 162 / 3e-48 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04577 DUF563 Protein of unknown function (DUF563)
Representative CDS sequence
>Potri.007G112500.1 pacid=42765753 polypeptide=Potri.007G112500.1.p locus=Potri.007G112500 ID=Potri.007G112500.1.v4.1 annot-version=v4.1
ATGGCCAAATCACCTCCAGAACTAAGCAGACCCACATATCCCACTCTCAAAACTCCTTCCTGTCCTAAACAACGCACTACCATGTCAGCCTCTTCTCTCT
ACTCCCCTAAACTCTCTATCTTCCTTCTAGTCCTTTGCGTTTCTCTCTTCACTCTCTACCACATCCGGTTTCTCCATGCTCCACCATCTTCAACTTCATG
GTCTCTCATGCACCATTGGGAAAGAGTAACCAATTGCACCCAAGAACTCGAATCCATGGCTGAAAAACTGCGGCAGGCGGTCACATTTCTCCCCCTTAAG
GACTTACGCTATGCAGATACAGCTCCTGAAGGTCACACGTGGTTCATGAGCTCTATGCATGATACTCGTGAAGAAGGTGAAGTGCAATATCAGCAGTTTC
CTTCAGAATCGTCAAAAGGTAGGTTACTTTGCTTGAAAGGAAAGGAGACACATGATGGTTCTTGGAATTCATATGCACTGGCATGGCCTGAAGCATTGCC
TATCAATGCCACTCTTCTAAAAGGACTAACCTTTGTATCATATAACCATTATAACTATGATAATATTTGGCATGGGTTATCAGCAATGGTACCATTTGTT
TCTTGGCATAGAAGAAATGGGTGTGAATCTCCAAGTAGATGGATTCTGTACCACTGGGGTGAGCTAAGGTTCAATATGAGTCCATGGCTAAAGATCCTAA
TAGAGGCAACATTTGGTGGAGCCCCATATATTGAAAACTTTGAAGGGGTTAATGATAGTCAACCAGTTTGCTTTGAAAAGTCTGTGGTGATGAGGCACAA
TGAAGGAGGCATGTCAAGAGACACGATGATTGAGACTTATGATTTGATGAGGTGCAAAGCTAAGGTGTATTGTAATTTAAGCTTAGAAGGTAGGATTGCT
GAGGTTAATAAGCAAGGTTTACCAGTGATTGGCATGACCCTGTTCATGAGAACTGGTACAAGATCATTCAAGAATGAATCTGCAGTGATTGGAATCTTTG
AGAAGGAGTGCGCTAAGATAGATGGGTGCAGGTTGATGGTGGCATACTCCAACAATCTAACATTTTGCGAGCAGGTGAAGTTGATGAGCTTGACAGATAT
TCTAGCATCTGCTCATGGTGCTCAGTTAACAAACTTGTTCCTAATGGACAAAAACAGCAGTGTCATGGAGTTCTTCCCAAAAGGATGGTTAAAACTTGCT
GGTGTAGGCCAATATGTTTTTCACTGGTTGGCAGGCTGGTCTGGGATGAGACACCAAGGAGCATGGCGAGACCCTAATGGAGATGAATGCCCCTACGGCG
AAGATGATCGCCGGTGCATGACAATTTACAAGACTGGCAAGATTGGACTCAACGAGACTTACTTTACTGAGTGGGCTAAAAAAGTTCTCAATGAAGTTAA
AATAAAGAAGTTGGAGGCAGCAGCAAATAAGACTAATGCTTCAGCTTCTATTTGTGCTTGTGGCTAG
AA sequence
>Potri.007G112500.1 pacid=42765753 polypeptide=Potri.007G112500.1.p locus=Potri.007G112500 ID=Potri.007G112500.1.v4.1 annot-version=v4.1
MAKSPPELSRPTYPTLKTPSCPKQRTTMSASSLYSPKLSIFLLVLCVSLFTLYHIRFLHAPPSSTSWSLMHHWERVTNCTQELESMAEKLRQAVTFLPLK
DLRYADTAPEGHTWFMSSMHDTREEGEVQYQQFPSESSKGRLLCLKGKETHDGSWNSYALAWPEALPINATLLKGLTFVSYNHYNYDNIWHGLSAMVPFV
SWHRRNGCESPSRWILYHWGELRFNMSPWLKILIEATFGGAPYIENFEGVNDSQPVCFEKSVVMRHNEGGMSRDTMIETYDLMRCKAKVYCNLSLEGRIA
EVNKQGLPVIGMTLFMRTGTRSFKNESAVIGIFEKECAKIDGCRLMVAYSNNLTFCEQVKLMSLTDILASAHGAQLTNLFLMDKNSSVMEFFPKGWLKLA
GVGQYVFHWLAGWSGMRHQGAWRDPNGDECPYGEDDRRCMTIYKTGKIGLNETYFTEWAKKVLNEVKIKKLEAAANKTNASASICACG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G33590 unknown protein Potri.007G112500
[exp]
0 1
Potri.006G183333
[exp]
6.00 0.7727
AT3G63420 AGG1, ATAGG1 Ggamma-subunit 1 (.1.2) Potri.005G216100
[exp]
15.96 0.8371 Pt-AGG1.1
AT2G39800 ATP5CS, P5CS1 delta1-pyrroline-5-carboxylate... Potri.008G060200
[exp]
16.58 0.7701
AT1G24260 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-... Potri.001G058400
[exp]
23.74 0.7952
AT1G80960 F-box and Leucine Rich Repeat ... Potri.011G098700
[exp]
34.11 0.7897
AT5G18840 Major facilitator superfamily ... Potri.010G026500
[exp]
35.31 0.7541
AT1G70790 Calcium-dependent lipid-bindin... Potri.010G110900
[exp]
35.66 0.7382
AT1G21740 Protein of unknown function (D... Potri.004G177200
[exp]
42.30 0.7707
AT5G01750 Protein of unknown function (D... Potri.016G131300
[exp]
45.49 0.7596
AT1G30870 Peroxidase superfamily protein... Potri.003G156100
[exp]
48.85 0.7369

Potri.007G112500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.