Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64330 989 / 0 JK218, RPT3, NPH3 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) AT5G10250 446 / 3e-149 DOT3 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) AT1G30440 447 / 6e-149 Phototropic-responsive NPH3 family protein (.1) AT5G03250 403 / 1e-132 Phototropic-responsive NPH3 family protein (.1) AT5G67440 389 / 3e-127 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT3G44820 389 / 3e-126 Phototropic-responsive NPH3 family protein (.1) AT5G13600 383 / 5e-125 Phototropic-responsive NPH3 family protein (.1) AT1G67900 377 / 5e-122 Phototropic-responsive NPH3 family protein (.1.2.3) AT5G48800 376 / 6e-122 Phototropic-responsive NPH3 family protein (.1) AT2G14820 376 / 1e-121 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G048200 [exp] 1241 / 0 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Potri.005G075400 [exp] 545 / 0 AT5G10250 695 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.007G093000 [exp] 511 / 6e-174 AT5G10250 706 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.001G357100 [exp] 473 / 2e-159 AT1G30440 971 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.011G091100 [exp] 456 / 1e-152 AT1G30440 924 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.016G090400 [exp] 419 / 3e-138 AT5G03250 768 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 412 / 1e-135 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.013G024400 [exp] 408 / 6e-135 AT5G10250 331 / 5e-106 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 409 / 2e-134 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014337 [exp] 498 / 1e-168 AT5G10250 620 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10026046 [exp] 496 / 1e-167 AT5G10250 639 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 3, Phototropic-responsive NPH3 family protein (.1) Lus10040484 [exp] 472 / 7e-161 AT5G64330 440 / 5e-150 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10011290 [exp] 445 / 3e-150 AT5G64330 438 / 3e-149 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2) Lus10023274 [exp] 440 / 3e-146 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10038531 [exp] 437 / 5e-145 AT1G30440 915 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 406 / 2e-133 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 400 / 3e-131 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 399 / 2e-130 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10040409 [exp] 398 / 8e-130 AT5G03250 667 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.007G112600.1 pacid=42766395 polypeptide=Potri.007G112600.1.p locus=Potri.007G112600 ID=Potri.007G112600.1.v4.1 annot-version=v4.1 ATGTGGGACTCTGAGAGTGAATCTGTTACTGGTAGAGATTATGGAAATGGAATCCTTTCCTCGAGCAAGCATGGTGTCGAGACTGATGGATTTGAGCAAA GAGACCACTCATGGTATGTCGCAACTGATATTCCAAGTGATTTTCTAGTTCAGGTTGGAGATGTAAATTTCCACTTGCATAAGTATCCGTTGCTTTCAAG GAGTGGAAAAATGAATAGACTAATATACGAATCGCGTGACCTGGACCTTAACAAGGTAGCATTGGATGATCTTCCGGGTGGACCGGAGGCGTTTGAGCTT GCAGCAAAATTCTGCTATGGAATTGCTGTTGATCTAACAGCAGCCAATATCTCTGGCCTCAGATGTGCTGCAGAGTACCTTGAAATGACAGAGGACTTGG AAGAAGGCAATCTTATTTTCAAAACCGAAGCATTTCTCAGTTACGTGGTGCTATCTTCATGGAGAGATTCTATATTGGTATTGAAAAGCAGTGAGAAGCT CTCACCATGGGCGGAGAACCTTCAGATTGTTCGAAGATGCAGCGAGTCCATTGCTTGGAAGGCTTGTGCCAATCCTAAAGGAATAAGGTGGGCATACACA GGAAAACCCCCTAAAGTTTCTAGTCCAAAATGGAATGAGATGAAGGATTCAAGTCCTAGTAGAAACTCCCAAGTTCCTCCTGATTGGTGGTTTGAAGATG TTTCAATCCTTAGGATTGATCACTTTGTTAGAGTCGTTACTGCAATCAAGGTAAAGGGTATGAGGTTTGAATTGACTGGAGCTGCAATTGTGCATTATGC AGGAAAATGGCTTCCAGGTTTGATTCAAAATGGGGGAGGTTTTATAGATGAAGCAAGCAATAGCAGCAACAGTAATAGTAGTAGTAGTAGTGGAGGCATC AGTTGGAAAGGTGGACTCCATATGATTGTGGCAGGAACTAAAGATGACACCCCAACAGTTCAGGCCAAAGATCAACGGATGATCATCGAGAGCCTAATCA GCATAATCCCGCCACAGAAGGATAGTGTCTCTTGCAGCTTCCTTCTTCGCCTGCTGAGAATGGCAAACATGTTGAAAGTGGCACCTGCTCTGGTTACTGA ATTGGAGAAGCGCGTCGGAATGCAGTTTGAACAGGCTACTTTGGCAGACCTTCTAGTACCTTCTTACAATAAAAATGAAACTTTGTTTGATGTGGATCTT GTTCAGAGACTTCTCGAGCATTTTCTGGTTCAAGAACAAACAGAAAGTTCAAGTCCAAGCAGACAAACATTTTCTGACAAAAATATGCACGATGGAACTC AAAGGAGTGCTAATACAAGTTCCAAAATGAGAGTAGCAAGGCTTGTTGACAGTTATCTTACAGAGGTGTCAAGAGATAGAAACCTTTCACTGACGAAGTT CCAGGTACTGGCAGAAGCTTTGCCTGAATCCGCAAGGACCTGCGACGATGGACTCTATAGAGCAATCGATTCTTATCTTAAGGCTCATCCATCATTATCT GAGCATGAAAGGAAGCGCCTCTGTCGGGTGATGGACTGCCAAAAACTCTCAATTGATGCTTGCATGCATGCTGCTCAAAATGAAAGACTACCGCTTAGAG TTGTAGTCCAAGTACTCTTTTCTGAGCAGGTGAAAATAAGCAATTCATTAGCAAACAATACTCTGAAAGAATCTAGTGAAGCTCAGTACCAGCCTATGAT ATCAAACAGAAAAACTCTACTTGAAGGGACACCACAGTCATTCCAAGAAGGATGGGCAACAGCTAAGAAGGACATTAACACTCTCAAGTTTGAACTCGAA ACCGTGAAGGCTAAATACCTTGAGCTCCAGAATGACATGGATAATTTGCAGAGAAAGTTTGATAAGATGACAAATAAGAAACAAACATCAGCATGGACCA CAGGGTGGAAGAAACTTGGCAAATTTACCAAGATGACAAATTTGGAAAACAACGAAATCGGGTCTCAGGTTGCAGCTCCTGAAGAACAGACTAGAAAGAC ACCTGGAAGATGGAGAAATTCTATTTCCTAA
AA sequence Show only first row Show all	>Potri.007G112600.1 pacid=42766395 polypeptide=Potri.007G112600.1.p locus=Potri.007G112600 ID=Potri.007G112600.1.v4.1 annot-version=v4.1 MWDSESESVTGRDYGNGILSSSKHGVETDGFEQRDHSWYVATDIPSDFLVQVGDVNFHLHKYPLLSRSGKMNRLIYESRDLDLNKVALDDLPGGPEAFEL AAKFCYGIAVDLTAANISGLRCAAEYLEMTEDLEEGNLIFKTEAFLSYVVLSSWRDSILVLKSSEKLSPWAENLQIVRRCSESIAWKACANPKGIRWAYT GKPPKVSSPKWNEMKDSSPSRNSQVPPDWWFEDVSILRIDHFVRVVTAIKVKGMRFELTGAAIVHYAGKWLPGLIQNGGGFIDEASNSSNSNSSSSSGGI SWKGGLHMIVAGTKDDTPTVQAKDQRMIIESLISIIPPQKDSVSCSFLLRLLRMANMLKVAPALVTELEKRVGMQFEQATLADLLVPSYNKNETLFDVDL VQRLLEHFLVQEQTESSSPSRQTFSDKNMHDGTQRSANTSSKMRVARLVDSYLTEVSRDRNLSLTKFQVLAEALPESARTCDDGLYRAIDSYLKAHPSLS EHERKRLCRVMDCQKLSIDACMHAAQNERLPLRVVVQVLFSEQVKISNSLANNTLKESSEAQYQPMISNRKTLLEGTPQSFQEGWATAKKDINTLKFELE TVKAKYLELQNDMDNLQRKFDKMTNKKQTSAWTTGWKKLGKFTKMTNLENNEIGSQVAAPEEQTRKTPGRWRNSIS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64330		JK218, RPT3, NP...	ROOT PHOTOTROPISM 3, NON-PHOTO...		Potri.007G112600 [exp]	0	1
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	3.74	0.8464	Pt-BRI1.2
AT1G21830			unknown protein		Potri.005G177600 [exp]	5.91	0.8111
AT5G41315	bHLH	MYC6.2, GL3	GLABROUS 3, GLABRA 3, basic he...		Potri.002G159400 [exp]	6.63	0.8326	Pt-TAN1.2
AT4G14740			Plant protein of unknown funct...		Potri.010G082400 [exp]	9.38	0.7959
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.001G240400 [exp]	10.39	0.8107	Pt-APK1.2
AT5G50400		ATPAP27, PAP27	ARABIDOPSIS THALIANA PURPLE AC...		Potri.012G097400 [exp]	12.40	0.7707	PPD3.2
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.005G086500 [exp]	12.56	0.8404	Pt-BRI1.1
AT5G17760			P-loop containing nucleoside t...		Potri.005G119900 [exp]	13.26	0.7892
AT4G24230		ACBP3	acyl-CoA-binding domain 3 (.1....		Potri.002G120200 [exp]	15.87	0.7852
AT5G23280	TCP	TCP7	TCP family transcription facto...		Potri.007G074028 [exp]	16.30	0.7989

Compare expression of checked genes

Potri.007G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.