Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G23600 277 / 1e-94 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G23570 264 / 1e-89 alpha/beta-Hydrolases superfamily protein (.1) AT1G35420 78 / 8e-17 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G201400 [exp] 282 / 2e-96 AT3G23600 352 / 3e-124 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.017G048100 [exp] 134 / 2e-39 AT3G23600 91 / 1e-22 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.019G079000 [exp] 52 / 7e-08 AT1G35420 332 / 4e-114 alpha/beta-Hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004436 [exp] 291 / 4e-100 AT3G23570 222 / 7e-73 alpha/beta-Hydrolases superfamily protein (.1) Lus10035767 [exp] 269 / 2e-91 AT3G23600 340 / 2e-119 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10027997 [exp] 243 / 4e-81 AT3G23600 267 / 1e-90 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000665 [exp] 186 / 2e-58 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000668 [exp] 186 / 2e-58 AT3G23600 194 / 2e-61 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10000664 [exp] 136 / 1e-37 AT3G23570 166 / 1e-48 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF12695 [poplar] [flax] Abhydrolase_5 Alpha/beta hydrolase family
Representative CDS sequence Show only first row Show all	>Potri.007G112700.1 pacid=42766309 polypeptide=Potri.007G112700.1.p locus=Potri.007G112700 ID=Potri.007G112700.1.v4.1 annot-version=v4.1 ATGTCAAGTCCTCAGTGTTTTGAGAACCCACCGAAACTGACTCCAGATTATGGCGCAGGGACAGTCCAAGAACTTGGTGGCCTTAAAACCTATGTTACTG GTGCTTCAGATTCCAAGCTAGCCATCCTTCTCATTGCCGATGCTTTTGGTTATGAAGCTCCGAATTTGAGGAAGCTTGCAGACAAAGTTGCAGCTGCTGG ATTCTTCGTAGTAGTTCCTGATTTTTTTTATGGTGATCCGATTGATCTAAGCAGGCCTGGCTTTGATATAGAGGCATGGAAAAAACTCCATAACACGGAC AAAGGACATGAAAATGCAAAATTGGTAATTGCCACTCTAAAAAGTAAGGGTGTGAATTCCATTGGCGCGGCAGGTTTTTGCTGGGGAGGGAACGTGGCAG TGAAATTAGCCAGTTCTAATGATATTCAAGCTGCAGTTATATTGCATCCTGGTCCACTTACCATTGATGAAATTAGAGAGGTAAAGATTCCAATTGCTGT TCTTGGAGCTGAAATTGACCATTATTCTCCGCCAGAACAATTGAAGGAATTTGGAGAAATTTTATCCGCAAAATCTCAGCTTGCTAGCCTTTTGAAAATA TTCCCTGGTGTCAGTCATGGATGGACAGTTCGTTACAATGTCGAGGATGAACCGGCTGTTAAGAGTGCTGAAGAAGCTCACCGCGACATGTTACACTGGT TTACCAAGTTTGTCAAGTGA
AA sequence Show only first row Show all	>Potri.007G112700.1 pacid=42766309 polypeptide=Potri.007G112700.1.p locus=Potri.007G112700 ID=Potri.007G112700.1.v4.1 annot-version=v4.1 MSSPQCFENPPKLTPDYGAGTVQELGGLKTYVTGASDSKLAILLIADAFGYEAPNLRKLADKVAAAGFFVVVPDFFYGDPIDLSRPGFDIEAWKKLHNTD KGHENAKLVIATLKSKGVNSIGAAGFCWGGNVAVKLASSNDIQAAVILHPGPLTIDEIREVKIPIAVLGAEIDHYSPPEQLKEFGEILSAKSQLASLLKI FPGVSHGWTVRYNVEDEPAVKSAEEAHRDMLHWFTKFVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	0	1
AT1G51760		JR3, IAR3	JASMONIC ACID RESPONSIVE 3, IA...		Potri.003G045200 [exp]	2.00	0.8904	IAR3.1
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	2.23	0.8955
AT2G19130			S-locus lectin protein kinase ...		Potri.013G121000 [exp]	3.31	0.8787
AT5G47650		ATNUDX2, ATNUDT...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.016G006000 [exp]	5.09	0.8947
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.012G019900 [exp]	5.29	0.8848
AT2G31880		SOBIR1, EVR	SUPPRESSOR OF BIR1 1, EVERSHED...		Potri.015G086800 [exp]	5.47	0.8879
AT2G03430			Ankyrin repeat family protein ...		Potri.002G213200 [exp]	6.32	0.8885
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	8.48	0.8835
AT5G45130		ATRAB-F2A, RHA1...	ARABIDOPSIS RAB HOMOLOG F2A, R...		Potri.018G079300 [exp]	10.39	0.8938
AT1G14560			Mitochondrial substrate carrie...		Potri.006G226300 [exp]	12.64	0.8517

Compare expression of checked genes

Potri.007G112700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.