Plant FIBer expression Database

Potri.007G113200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G58120 252 / 6e-80 unknown protein
AT5G01710 61 / 5e-10 methyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G047700
[exp]
650 / 0 AT1G58120 254 / 6e-81 unknown protein
Potri.002G104500
[exp]
295 / 1e-96 AT1G58120 283 / 1e-91 unknown protein
Potri.016G128100
[exp]
57 / 2e-08 AT5G01710 740 / 0.0 methyltransferases (.1)
Potri.006G105100
[exp]
56 / 2e-08 AT5G01710 720 / 0.0 methyltransferases (.1)
Potri.013G153300
[exp]
49 / 5e-06 AT5G01710 498 / 1e-173 methyltransferases (.1)
Potri.006G128800
[exp]
48 / 1e-05 AT3G53400 418 / 3e-143 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012217
[exp]
74 / 4e-14 AT5G01710 733 / 0.0 methyltransferases (.1)
Lus10001267
[exp]
72 / 2e-13 AT5G01710 737 / 0.0 methyltransferases (.1)
Lus10014232
[exp]
70 / 1e-12 AT5G01710 697 / 0.0 methyltransferases (.1)
Lus10022682
[exp]
62 / 5e-10 AT5G01710 698 / 0.0 methyltransferases (.1)
Lus10026502
[exp]
42 / 0.0009 AT3G53400 392 / 1e-133 unknown protein
Lus10019932
[exp]
42 / 0.001 AT3G53400 385 / 1e-130 unknown protein
PFAM info
Representative CDS sequence
>Potri.007G113200.1 pacid=42765846 polypeptide=Potri.007G113200.1.p locus=Potri.007G113200 ID=Potri.007G113200.1.v4.1 annot-version=v4.1
ATGGATGTGGCTCGTGGGTTGTCGGCTAAGAATCTAAATGGGATCAAGCATTTGCAGAATGGAGGGATTGGCTTGAATTCAGATGCCATTTTGGTGCTTA
AGCTTCCTGATTCGCGAGTAATGCGTGTTGTGTCTCGCTCCTTCTTTTTGGCCATGCTTGTTCTTACACTGCCATTTGTGGTGTCCATTTTAAGGGAACT
TGATTCAAGTTCTTATTATGATGACCCCGGTTCTGCTTCATTTGATCTTGAATCCTTCGATCTGTTGTTGCAAGATCTGGCCAAGGAGGGACTTATCAAG
AAGGGCGATAAAGCTCTCATTGTTTGCTCCGGCGTCGGGGCTGTAGTTGATACTTCAAGATTCTTGAATGACAATGATATTGACTTCGTGTCGGAATCTG
ATTTGGAGCAAGAAAGATTGTTCCCGAATGCAACATTTGATTTTGCATTGACATTGCGCATTGGAGATGCTAGATTTGTTGATCGTGTTGTGAAAGTTGG
AGGCATTTTGGTTACTCAATTGAGCAGTGACCCCTCAAATGCTTTCCAAAAGCTGTCAAATTATAGAGCTGTGTATCTTCGGCGATATGATTCAACCATA
GTGGCAATGAGGAAAACAAGTTTGGTGAATCAGGTAGTAGTTTCCTCAGCAAAGAGGCGGCCTCTGCAGCTGGCATTGGATGCTAAGAAAACAGCATTGC
AAGGCTTGGAAGATGTTCTGCTTGAGCCTCCGCGGAAGGCTCTGGCCAAATCTAGAGTGTACTTGAAGAGATTCAAATATCTTCCCAACTTGTTGGGAGA
CTCTTTAGAAGATTACTCACGTCGAGTTTTCATCCATGCGGGTTTGCATGAGGAGAAGAAAGGTGCAATGCAATGGTTTAATGAAAACTATCCAACTAGG
AATCAAGACTTTGAGTTTCACAGCATAAACACGTCACCTGAAGGACATTCTAAGAGGGTGGCATCACCTGCTGATGTTTCGAACTGGCTGATGAAGAACG
TGAGGGAAGATGAGTTTGTTGTGATGAAAGCAGAAGCAGAAGTAGCTGAGGAGATGGTGAAGAGGAAGACTATTGGTTTGGTGGATGAACTGTTTTTGGA
GTGCAACAACCAATGGAAAAATGGGGAAAGAAAGAAGAGCAAGAGGGCTTATTGGGAATGTGTAGCACTTTATGGAAGGCTGAGGGACGAGGGAGTTGCT
GTGCATCAATGGTGGGATTGA
AA sequence
>Potri.007G113200.1 pacid=42765846 polypeptide=Potri.007G113200.1.p locus=Potri.007G113200 ID=Potri.007G113200.1.v4.1 annot-version=v4.1
MDVARGLSAKNLNGIKHLQNGGIGLNSDAILVLKLPDSRVMRVVSRSFFLAMLVLTLPFVVSILRELDSSSYYDDPGSASFDLESFDLLLQDLAKEGLIK
KGDKALIVCSGVGAVVDTSRFLNDNDIDFVSESDLEQERLFPNATFDFALTLRIGDARFVDRVVKVGGILVTQLSSDPSNAFQKLSNYRAVYLRRYDSTI
VAMRKTSLVNQVVVSSAKRRPLQLALDAKKTALQGLEDVLLEPPRKALAKSRVYLKRFKYLPNLLGDSLEDYSRRVFIHAGLHEEKKGAMQWFNENYPTR
NQDFEFHSINTSPEGHSKRVASPADVSNWLMKNVREDEFVVMKAEAEVAEEMVKRKTIGLVDELFLECNNQWKNGERKKSKRAYWECVALYGRLRDEGVA
VHQWWD

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G58120 unknown protein Potri.007G113200
[exp]
0 1
AT3G07570 Cytochrome b561/ferric reducta... Potri.014G197500
[exp]
5.29 0.7302
AT1G51630 O-fucosyltransferase family pr... Potri.010G250600
[exp]
12.12 0.7343
AT1G08250 AtADT6, ADT6 Arabidopsis thaliana arogenate... Potri.004G188100
[exp]
15.49 0.6835
AT5G07220 ATBAG3 BCL-2-associated athanogene 3 ... Potri.001G358200
[exp]
18.97 0.7274
AT5G06390 FLA17 FASCICLIN-like arabinogalactan... Potri.016G066500
[exp]
20.56 0.6382
AT1G15950 IRX4, ATCCR1, C... IRREGULAR XYLEM 4, cinnamoyl c... Potri.003G181400
[exp]
24.16 0.7159 CCR.10,CCR7
AT2G30360 PKS5, CIPK11, S... SNF1-RELATED PROTEIN KINASE 3.... Potri.013G155600
[exp]
29.47 0.6203
AT1G11790 AtADT1, ADT1 Arabidopsis thaliana arogenate... Potri.011G004700
[exp]
32.01 0.6616
AT3G18210 2-oxoglutarate (2OG) and Fe(II... Potri.008G125800
[exp]
33.04 0.5848
AT4G01850 AtSAM2, SAM-2, ... S-adenosylmethionine synthetas... Potri.002G189200
[exp]
33.22 0.7263

Potri.007G113200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.