Plant FIBer expression Database

Potri.007G113550 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G113550.1 pacid=42765857 polypeptide=Potri.007G113550.1.p locus=Potri.007G113550 ID=Potri.007G113550.1.v4.1 annot-version=v4.1
ATGCTGAAACAACGGAGACTCAGGTTAATTTGTTCCTGTGGAGGTAAATGCAGAATCTGTTCTGTTATCATGCTTACGCAACTCTGCTTCTTAGATTACT
TTTCTGATGCTTTGTTTTATTATGGTGTTTCGGCATATTTTGCATCAAACTCTGCTACAGAAAATGCAAAATATTTCTGTTTAGACCGAAAAGTTCAAAT
TGCAACCCGGTTTAAAGGACAGTCAAGGATATTGTTTGAAACAAGCATCTCAACAGAAAAACATATTAAGCATAACGCCATTCATATTTTGAAACAGTAT
ACCAACATTATTTTCATGTGA
AA sequence
>Potri.007G113550.1 pacid=42765857 polypeptide=Potri.007G113550.1.p locus=Potri.007G113550 ID=Potri.007G113550.1.v4.1 annot-version=v4.1
MLKQRRLRLICSCGGKCRICSVIMLTQLCFLDYFSDALFYYGVSAYFASNSATENAKYFCLDRKVQIATRFKGQSRILFETSISTEKHIKHNAIHILKQY
TNIIFM

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G113550
[exp]
0 1
AT5G08110 nucleic acid binding;ATP-depen... Potri.012G063201
[exp]
3.87 0.8268
AT3G21810 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.007G121700
[exp]
6.78 0.8373
AT2G38290 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammo... Potri.005G054900
[exp]
7.00 0.8427
AT1G03160 FZL FZO-like (.1.2) Potri.002G053332
[exp]
10.58 0.8064
AT3G50430 unknown protein Potri.005G133500
[exp]
10.67 0.8163
AT4G36980 unknown protein Potri.005G138200
[exp]
13.41 0.8269
AT5G02520 unknown protein Potri.004G077400
[exp]
16.61 0.7637
AT1G30970 C2H2ZnF SUF4 suppressor of FRIGIDA4, zinc f... Potri.003G074200
[exp]
16.97 0.7971
AT5G49430 WD40/YVTN repeat-like-containi... Potri.010G142700
[exp]
22.49 0.7914
AT1G20760 Calcium-binding EF hand family... Potri.007G063200
[exp]
22.49 0.7931

Potri.007G113550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.