Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G19620 776 / 0 Glycosyl hydrolase family protein (.1) AT1G02640 764 / 0 ATBXL2, BXL2 beta-xylosidase 2 (.1) AT5G64570 756 / 0 ATBXL4, XYL4 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) AT5G09730 748 / 0 ATBXL3, XYL3, BXL3, ATBX3 beta-xylosidase 3 (.1) AT5G49360 730 / 0 ATBXL1, BXL1 beta-xylosidase 1 (.1) AT5G10560 659 / 0 Glycosyl hydrolase family protein (.1) AT1G78060 635 / 0 Glycosyl hydrolase family protein (.1) AT5G09700 419 / 5e-138 Glycosyl hydrolase family protein (.1) AT3G47000 140 / 9e-35 Glycosyl hydrolase family protein (.1) AT3G47050 130 / 2e-31 Glycosyl hydrolase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197200 [exp] 806 / 0 AT1G02640 1189 / 0.0 beta-xylosidase 2 (.1) Potri.014G122200 [exp] 787 / 0 AT1G02640 1154 / 0.0 beta-xylosidase 2 (.1) Potri.001G206800 [exp] 769 / 0 AT5G64570 1168 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.001G294700 [exp] 754 / 0 AT3G19620 1080 / 0.0 Glycosyl hydrolase family protein (.1) Potri.010G141400 [exp] 753 / 0 AT5G49360 1113 / 0.0 beta-xylosidase 1 (.1) Potri.003G022900 [exp] 743 / 0 AT5G64570 1138 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Potri.008G108100 [exp] 731 / 0 AT5G49360 1104 / 0.0 beta-xylosidase 1 (.1) Potri.002G094000 [exp] 677 / 0 AT1G78060 1077 / 0.0 Glycosyl hydrolase family protein (.1) Potri.005G168500 [exp] 673 / 0 AT1G78060 1069 / 0.0 Glycosyl hydrolase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010015 [exp] 766 / 0 AT1G02640 1148 / 0.0 beta-xylosidase 2 (.1) Lus10020966 [exp] 766 / 0 AT5G64570 1181 / 0.0 ARABIDOPSIS THALIANA BETA-D-XYLOSIDASE 4, beta-D-xylosidase 4 (.1) Lus10022374 [exp] 673 / 0 AT1G78060 1065 / 0.0 Glycosyl hydrolase family protein (.1) Lus10004271 [exp] 662 / 0 AT5G10560 989 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019099 [exp] 657 / 0 AT1G78060 1007 / 0.0 Glycosyl hydrolase family protein (.1) Lus10016858 [exp] 649 / 0 AT5G49360 922 / 0.0 beta-xylosidase 1 (.1) Lus10007775 [exp] 439 / 2e-145 AT1G78060 725 / 0.0 Glycosyl hydrolase family protein (.1) Lus10019240 [exp] 250 / 1e-73 AT5G10560 407 / 1e-133 Glycosyl hydrolase family protein (.1) Lus10037728 [exp] 143 / 1e-39 AT5G49360 177 / 1e-52 beta-xylosidase 1 (.1) Lus10010657 [exp] 145 / 6e-36 AT5G20950 889 / 0.0 Glycosyl hydrolase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00933 [poplar] [flax] Glyco_hydro_3 Glycosyl hydrolase family 3 N terminal domain CL0058 [poplar] [flax] PF01915 [poplar] [flax] Glyco_hydro_3_C Glycosyl hydrolase family 3 C-terminal domain CL0159 [poplar] [flax] E-set PF14310 [poplar] [flax] Fn3-like Fibronectin type III-like domain
Representative CDS sequence Show only first row Show all	>Potri.007G114300.1 pacid=42765279 polypeptide=Potri.007G114300.1.p locus=Potri.007G114300 ID=Potri.007G114300.1.v4.1 annot-version=v4.1 ATGGCGAAAATCCTTTGTTCGTTTATTTTTCTTTGTGCTTGCTTTGTTCTTTCTACTGGTGCTAGAGTTAATCATAGAATCCTATCATCTTCTACTTTGG ATCATGATGATGCTACCCCTACTGGCTCAAACTTTACCTTTGTTTGTGACCCCGCCAGATATGCTAGTTTGGGTTTAGATGTCTCAAACTTTGCATTTTG TGACACTTCATTGTCTTATGAAGTTAGGGCAATGGATTTAGTCAATCAAATGACCTTGAATGAAAAAGTTCTGCAACTTGGAAACAAAGCTTATGGGGTG CCTAGGTTAGGGCTTGCTGAATATCAGTGGTGGTCAGAGGCTCTCCATGGAGTGTCAAATGTCGGTCCAGGAACCTTCTTTGATGATTTGATTCCTGGTT CAACAAGTTTCCCTACGGTGATAACCACTGCAGCAGCATTCAACGAGTCACTATGGAAAGCTATTGGGCAGGCCGTTTCAACAGAAGCAAGAGCTATGTA TAATCTAGGTCGGGCTGGATTAACTTATTGGAGTCCAAATATTAATGTAGTGAGGGATCCTCGATGGGGAAGAGCCATGGAGACACCAGGAGAAGATCCT TACCTTGTTGGCAGATATGCTGTTAATTATGTGAGAGGCTTACAAGATGTTGAGGGATCAGAGAATTACACGGATCCTAATTCTAGACCCCTCAAAGTAT CCTCATGTTGCAAGCACTATGCTGCTTATGATGTTGATAATTGGAAAGGAGTTGAACGTTACACTTTTGATGCTAGAGTGTCAGAACAAGATATGGTGGA GACATTCCTTCGACCTTTTCAAATGTGTGTCAAGGATGGTGATGTTAGCAGTGTTATGTGTTCTTACAATCGTGTTAATGGCATACCTACTTGTGCTGAT CCGAAGCTTTTAAATCAAACTATTAGAGGAGATTGGGATCTACACGGATACATAGTTTCTGATTGTGATTCCTTACAAGTAATGGTTGAAAATCATAAAT GGCTTGGTGATACCAAAGAGGATGCAGTTGCACAAGCTCTTAAAGCAGGTTTGGATTTGGATTGTGGAGCTTACTACACGGAGAATGTTGAAGCTGCAGT TAGACAAGGAAAAGTCAGGGAGGCAGACATAGACAAGTCCCTGAATTTCCTTTATGTGGTTCTAATGAGATTAGGGTTTTTTGATGGAATCCCCCAATAC AACTCTTTTGGCAAGAATGATGTGTGCTCGAAGGAAAATATTGAGTTAGCAACCGAAGCTGCAAGGGAGGGGGCTGTTCTTCTAAAAAATGAAAATGATA GTCTACCTTTGAGCATTGAAAAAGTTAAAACCTTAGCCGTGATTGGACCTCATTCTAATGCTACCTCAGCTATGATTGGAAACTATGCTGGTATTCCATG CCAAATCATTACTCCTATTGAAGGGTTATCAAAATATGCGAAAGTGGATTATCAAATGGGATGCAGTGATATTGCATGCAAGGATGAGAGCTTTATATTC CCAGCAATGGAATCTGCAAAGAAAGCCGATGCCACCATTATTTTAGCTGGCATAGATTTGTCTATCGAGGCTGAAAGTCTTGATAGGGATGACCTTCTCC TTCCAGGCTACCAAACTCAACTTATCAATCAAGTTGCTAGTGTTTCTAATGGTCCGGTTGTTCTTGTACTCATGTCTGCTGGAGGTGTGGATATCTCTTT TGCCAAGAGTAATGGAGATATCAAATCTATTTTGTGGGTTGGATACCCTGGAGAAGAGGGAGGAAATGCTATCGCAGATGTTATTTTTGGCAAATATAAT CCAGGAGGAAGATTACCACTCACATGGCATGAAGCTGATTACGTGGATATGCTCCCAATGACGTCTATGCCTTTGAGACCAATTGATAGCCTAGGCTACC CAGGTCGTACTTACAAGTTCTTTAATGGATCTACTGTTTATCCATTTGGACATGGACTGAGTTATACTCAATTCACTTATAAGTTGACATCTACGATAAG ATCACTCGACATCAAATTGGATAAGTATCAATACTGTCATGATTTGGGATACAAGAATGACTCGTTCAAGCCTTCTTGTCCTGCAATTCGAGTTGATGAT TCTCAGTATAATGATCAGTTTGAATTTGAAGTTGAAGTCCTGAACGCAGGCGCTAAAGATGGGAGTGAAGTGGTCATTGTCTATGCAAAGCCACCAGAAG GAATTGACGCCACCTACATCAAGCAAGTTATCGGTTTCAAGAGGGTATTTGTTCCCGCTGGAGGCAGTGAGAAGGTGAAATTTGAGTTCAATGCTAGCAA GAGTTTACAGGTTGTAGACTTCAACGCCTACAGTGTTTTGCCTTCTGGTGGACACACTATTATGCTTGGAGATGATATAATTTCTTTTTCTGTCCAAATA AGATTTTGTTAG
AA sequence Show only first row Show all	>Potri.007G114300.1 pacid=42765279 polypeptide=Potri.007G114300.1.p locus=Potri.007G114300 ID=Potri.007G114300.1.v4.1 annot-version=v4.1 MAKILCSFIFLCACFVLSTGARVNHRILSSSTLDHDDATPTGSNFTFVCDPARYASLGLDVSNFAFCDTSLSYEVRAMDLVNQMTLNEKVLQLGNKAYGV PRLGLAEYQWWSEALHGVSNVGPGTFFDDLIPGSTSFPTVITTAAAFNESLWKAIGQAVSTEARAMYNLGRAGLTYWSPNINVVRDPRWGRAMETPGEDP YLVGRYAVNYVRGLQDVEGSENYTDPNSRPLKVSSCCKHYAAYDVDNWKGVERYTFDARVSEQDMVETFLRPFQMCVKDGDVSSVMCSYNRVNGIPTCAD PKLLNQTIRGDWDLHGYIVSDCDSLQVMVENHKWLGDTKEDAVAQALKAGLDLDCGAYYTENVEAAVRQGKVREADIDKSLNFLYVVLMRLGFFDGIPQY NSFGKNDVCSKENIELATEAAREGAVLLKNENDSLPLSIEKVKTLAVIGPHSNATSAMIGNYAGIPCQIITPIEGLSKYAKVDYQMGCSDIACKDESFIF PAMESAKKADATIILAGIDLSIEAESLDRDDLLLPGYQTQLINQVASVSNGPVVLVLMSAGGVDISFAKSNGDIKSILWVGYPGEEGGNAIADVIFGKYN PGGRLPLTWHEADYVDMLPMTSMPLRPIDSLGYPGRTYKFFNGSTVYPFGHGLSYTQFTYKLTSTIRSLDIKLDKYQYCHDLGYKNDSFKPSCPAIRVDD SQYNDQFEFEVEVLNAGAKDGSEVVIVYAKPPEGIDATYIKQVIGFKRVFVPAGGSEKVKFEFNASKSLQVVDFNAYSVLPSGGHTIMLGDDIISFSVQI RFC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G19620			Glycosyl hydrolase family prot...		Potri.007G114300 [exp]	0	1
AT5G15110			Pectate lyase family protein (...		Potri.015G064700 [exp]	3.46	0.8422
AT3G23250	MYB	ATMYB15, ATY19	myb domain protein 15 (.1.2)		Potri.011G040200 [exp]	3.46	0.8857
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107600 [exp]	4.24	0.8842
AT1G75700		HVA22G	HVA22-like protein G (.1)		Potri.004G166800 [exp]	4.47	0.8651
					Potri.014G003501 [exp]	8.12	0.7124
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.009G088466 [exp]	10.19	0.6837
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G394800 [exp]	12.00	0.6747
AT5G01680		ATCHX26	cation/H+ exchanger 26, ARABID...		Potri.016G127800 [exp]	15.90	0.6498	ATCHX27.1
					Potri.005G071951 [exp]	27.87	0.6607
					Potri.006G119250 [exp]	38.43	0.8416

Compare expression of checked genes

Potri.007G114300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.