Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09540 155 / 9e-43 Chaperone DnaJ-domain superfamily protein (.1) AT5G64360 158 / 4e-42 EIP9 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) AT1G62970 125 / 8e-30 Chaperone DnaJ-domain superfamily protein (.1) AT2G01710 117 / 7e-29 Chaperone DnaJ-domain superfamily protein (.1) AT5G37380 79 / 2e-15 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT2G25560 75 / 6e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05250 75 / 8e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT2G05230 75 / 8e-14 DNAJ heat shock N-terminal domain-containing protein (.1) AT4G19570 74 / 1e-13 Chaperone DnaJ-domain superfamily protein (.1) AT5G53150 74 / 1e-13 DNAJ heat shock N-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G044600 [exp] 709 / 0 AT5G64360 189 / 3e-53 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Potri.005G156100 [exp] 136 / 5e-35 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.002G105500 [exp] 130 / 4e-33 AT2G01710 308 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) Potri.015G020200 [exp] 86 / 3e-17 AT5G53150 574 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.014G165600 [exp] 83 / 3e-16 AT2G05230 730 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.001G057200 [exp] 82 / 5e-16 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 82 / 6e-16 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.012G001100 [exp] 80 / 3e-15 AT5G53150 570 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 79 / 4e-15 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037698 [exp] 208 / 4e-58 AT5G64360 184 / 9e-51 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10015692 [exp] 206 / 6e-58 AT5G64360 179 / 5e-50 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Lus10015891 [exp] 139 / 7e-36 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10009275 [exp] 138 / 1e-35 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10001744 [exp] 87 / 5e-18 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 85 / 3e-17 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012334 [exp] 84 / 1e-16 AT5G35753 414 / 3e-134 Domain of unknown function (DUF3444) (.1) Lus10006380 [exp] 84 / 1e-16 AT5G35753 420 / 2e-136 Domain of unknown function (DUF3444) (.1) Lus10008983 [exp] 79 / 7e-15 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012736 [exp] 76 / 1e-14 AT2G01710 134 / 8e-37 Chaperone DnaJ-domain superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.007G114800.3 pacid=42765797 polypeptide=Potri.007G114800.3.p locus=Potri.007G114800 ID=Potri.007G114800.3.v4.1 annot-version=v4.1 ATGGACGGGAGCAGCAGCGGAGGAGGAAACGGTTACAGAGTAGAAGCAGAACGGTGGTTATCTATATCAGAGAAACTCTTAGCCGCACGTGACTTGCACG GGGCTAAGAGCTTTGCCATCCGATCCCGAGAATCCGACCCGAGACTCTATCAATTCGCCGACCAAATCATCGCCGTTGCCGACACTCTTCTTGCCGGAGA GTTATGCGTCGAGAACAACCACTACTATGATTACTATACGATTCTCCAACTTGGTCGGTTTACTCAGGATCTCGAACTCATTGCGAATCAGTATCGGAAA CTCGCCTTATTGCTCAATCCGACGAGTAATAGGCTGCTCTTTGCTGATCAGGCGTTGGAGCTTGTGTCGGAGGCTTGGCTCGTTCTTTCCAATCCTGCTA AGAAGGCAATGTATGATCATGAGTTGCAACCGAGCCAGCTCGGTCTCCTTGTGACTCAGCAACTGCCACCTCCACCATTTCAACAGCAAGCGCCGTATGC TCCAGAGCCGATTCGGCCCGTCCCGCTGTTCACAACGCCGAGGATGCCCGAGTCTTCTATTCGGTTCCCCACTCAGCCCAAACCCTTGGATTCACCTCGG CCGCAAACTCAGCAAAGAAACCACCCGGAGCCAACTTGGCGACAACCTCAGCAGAAGCCAACTGAGCCAACTCATCAGCCTACCCCGCTGAAGGCCGCTA CTGAGCCAACTAAGCAATCAACTCCTCAGCGGAAGCCAACTGAGCCAACTCAGCAACCTACCCCGCTGAAGGCCGCTACTGAGCCAACTAAGCAGCCTAC CCTGCTGAAGGCCGCTACCGAGCCACCTAAGCAGTCAACTCCGTCTAAGACTCCCAAGGAGCCAACTTGGCCAGAAGTTGTGATTGGGCTAACTCGATCA GCTCCAAAGCGGAGCGTCACTGGTTCGACCCGGCGAGTGACTAAGCCCAAAGCTCCCACTACCGCTGCTGCTGTCATTGAGACAACGCATGTAACTCAGT CAGCTAGGAAGACGAGTGCGAGTGAGCCAGAGGCACCGAGTTTCTGGACTGCGTGTCCTTATTGTTATATACTGTATGAGTATCCAAAAGCTTACGAGGA GTGTATTCTGAGGTGCCAAAGTTGTAGGAGGGCATTTCATGCTGTCATGGTACCAGCACCGCCGGTGACTGGTAAAGATGCATGTTTTTGCTGCTGGGGA TTTTTTCCATTGGGATTTTCTGGTAATAATGAGAAAGGAGCTAATGGGTTTGGTAGTAATTGGTCGCCATTTTCGGCAATGTTTGCCACTCCATTCCAAG CTGGTGATGCTGTTGATAGTGGTGGTAAAATGTATAATAAATCGAAGCAAAAAGTGATATATAAAGATGATGTGTATATAGATATCTCTGACCCAAGTGA AGAGGAGTCTGATTCTGGTGATGAGTGGGGTAGAAATATGAGAAAGAAGGCAAAAAATGCCAAGGGGAAAGGAACTCTCGATAAAAAAGTGAAGAAATTG CCTAATGAAGGACTGAAGGAGGCGGGGGCAGCGACAGGAAATATTCAAAATTTGGATAGTGATGGCAGGGGTAGCGTACCGGAGGAGGTTGTGGGAAAAG GGGAAGGGAGTAGCGGGAAGAAGAAGACTGCAAAAGATCTGGGGAAGTTGGATTTGAATGTGATGTTTAGTAATGAGGTGGATGAGGCTGCGCCTGGACC AAGTCAAAGGAATGGGCCTGGGAATGAGGAGGAGGATAATATTGAAGGGATTGGGTTTTTTGAGGGTCTTGATGAGTTTTTGAGTACCTTGCCCCTACTT TCGGTTGTAGGGGATGATATGGTGAAGGCTACTTAG
AA sequence Show only first row Show all	>Potri.007G114800.3 pacid=42765797 polypeptide=Potri.007G114800.3.p locus=Potri.007G114800 ID=Potri.007G114800.3.v4.1 annot-version=v4.1 MDGSSSGGGNGYRVEAERWLSISEKLLAARDLHGAKSFAIRSRESDPRLYQFADQIIAVADTLLAGELCVENNHYYDYYTILQLGRFTQDLELIANQYRK LALLLNPTSNRLLFADQALELVSEAWLVLSNPAKKAMYDHELQPSQLGLLVTQQLPPPPFQQQAPYAPEPIRPVPLFTTPRMPESSIRFPTQPKPLDSPR PQTQQRNHPEPTWRQPQQKPTEPTHQPTPLKAATEPTKQSTPQRKPTEPTQQPTPLKAATEPTKQPTLLKAATEPPKQSTPSKTPKEPTWPEVVIGLTRS APKRSVTGSTRRVTKPKAPTTAAAVIETTHVTQSARKTSASEPEAPSFWTACPYCYILYEYPKAYEECILRCQSCRRAFHAVMVPAPPVTGKDACFCCWG FFPLGFSGNNEKGANGFGSNWSPFSAMFATPFQAGDAVDSGGKMYNKSKQKVIYKDDVYIDISDPSEEESDSGDEWGRNMRKKAKNAKGKGTLDKKVKKL PNEGLKEAGAATGNIQNLDSDGRGSVPEEVVGKGEGSSGKKKTAKDLGKLDLNVMFSNEVDEAAPGPSQRNGPGNEEEDNIEGIGFFEGLDEFLSTLPLL SVVGDDMVKAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09540			Chaperone DnaJ-domain superfam...		Potri.007G114800 [exp]	0	1
AT5G19420			Regulator of chromosome conden...		Potri.001G276900 [exp]	1.41	0.8556
AT4G22360			SWIB complex BAF60b domain-con...		Potri.006G010700 [exp]	3.00	0.7985
AT5G07900			Mitochondrial transcription te...		Potri.003G189300 [exp]	4.89	0.7993
AT5G62620			Galactosyltransferase family p...		Potri.010G040400 [exp]	9.79	0.7491
AT3G61610			Galactose mutarotase-like supe...		Potri.001G095300 [exp]	10.58	0.7744
AT3G55270		MKP1, ATMKP1	ARABIDOPSIS MITOGEN-ACTIVATED ...		Potri.008G049900 [exp]	10.95	0.7927	Pt-MKP1.2
AT4G18375			RNA-binding KH domain-containi...		Potri.004G066100 [exp]	11.40	0.7806
AT4G14790		ATSUV3, EDA15	embryo sac development arrest ...		Potri.010G084100 [exp]	15.71	0.7665
AT1G60670			Protein of unknown function (D...		Potri.010G097000 [exp]	17.32	0.7683
AT5G66180			S-adenosyl-L-methionine-depend...		Potri.007G056800 [exp]	19.36	0.7629

Compare expression of checked genes

Potri.007G114800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.