Plant FIBer expression Database

Potri.007G114901 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G114901.1 pacid=42766052 polypeptide=Potri.007G114901.1.p locus=Potri.007G114901 ID=Potri.007G114901.1.v4.1 annot-version=v4.1
ATGTCTGTCTACATACATGTTACTAGCATCCCCATCTTTCTCTTAATCATTTTACATGCTCTTCAAAGATTGTGCAGTGGATGGGAAAATTTGTGTTTCA
AATTAATTTTAACCAAATATCAATGTGACTTGATACCTTTTCTTGCTAAATTACGTTTGTCATGTTCTGTGGGCGTAGGGAACTCGGTTTTTCATGCCAT
GAATGCGATTTGTGAAGAGCAGGGTTTCATGTCTTGTATTGAAGTGTCGAAGGTACTATTTGTTCAGGTTTGA
AA sequence
>Potri.007G114901.1 pacid=42766052 polypeptide=Potri.007G114901.1.p locus=Potri.007G114901 ID=Potri.007G114901.1.v4.1 annot-version=v4.1
MSVYIHVTSIPIFLLIILHALQRLCSGWENLCFKLILTKYQCDLIPFLAKLRLSCSVGVGNSVFHAMNAICEEQGFMSCIEVSKVLFVQV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.007G114901
[exp]
0 1
AT3G29320 PHS1 alpha-glucan phosphorylase 1, ... Potri.008G093901
[exp]
15.55 0.8566
AT5G01510 RUS5 ROOT UV-B SENSITIVE 5, Protein... Potri.006G099700
[exp]
24.00 0.8221
AT2G03670 CDC48B cell division cycle 48B (.1) Potri.001G128700
[exp]
24.97 0.8061 Pt-CDC48.1
AT3G04480 endoribonucleases (.1) Potri.013G047400
[exp]
27.92 0.8497
AT1G63855 Putative methyltransferase fam... Potri.005G109000
[exp]
44.59 0.8205
AT1G77670 Pyridoxal phosphate (PLP)-depe... Potri.014G124100
[exp]
45.43 0.8469
AT1G17820 Putative integral membrane pro... Potri.018G152400
[exp]
45.92 0.8316
AT4G02550 unknown protein Potri.010G215600
[exp]
65.71 0.8335
AT3G23590 MED33A, RFR1 REF4-related 1 (.1) Potri.016G142500
[exp]
67.74 0.7807
AT4G23660 ATPPT1 polyprenyltransferase 1 (.1.2.... Potri.005G093700
[exp]
75.65 0.8124

Potri.007G114901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.