Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G09550 784 / 0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) AT3G59920 724 / 0 ATGDI2 RAB GDP dissociation inhibitor 2 (.1) AT2G44100 717 / 0 AT-GDI1, ATGDI1 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) AT3G06540 102 / 3e-23 AthREP Rab escort protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G001200 [exp] 756 / 0 AT2G44100 776 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) Potri.007G146600 [exp] 749 / 0 AT2G44100 777 / 0.0 guanosine nucleotide diphosphate dissociation inhibitor 1 (.1.2) Potri.005G028900 [exp] 122 / 6e-30 AT3G06540 605 / 0.0 Rab escort protein (.1) Potri.005G030000 [exp] 114 / 3e-27 AT3G06540 602 / 0.0 Rab escort protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035634 [exp] 778 / 0 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10010760 [exp] 777 / 0 AT5G09550 778 / 0.0 GDP dissociation inhibitor family protein / Rab GTPase activator family protein (.1) Lus10027094 [exp] 758 / 0 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1) Lus10008341 [exp] 755 / 0 AT3G59920 800 / 0.0 RAB GDP dissociation inhibitor 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00996 [poplar] [flax] GDI GDP dissociation inhibitor
Representative CDS sequence Show only first row Show all	>Potri.007G115300.1 pacid=42766596 polypeptide=Potri.007G115300.1.p locus=Potri.007G115300 ID=Potri.007G115300.1.v4.1 annot-version=v4.1 ATGGATGAAAACTACGATGTAATTGTTCTAGGAACCGGTCTCAAGGAATGCATTCTCAGTGGTCTTCTTTCTGTTGATGGACTCAAAGTATTGCATATGG ATCGCAATGACTATTATGGAGGAGAATCTACATCTCTTAATCTTAATCAGCTATGGAAGCGTTTCAGGGGAAGTGATACACCTCCGGAGAGCTTGGGTGC AAGCAAGGAGTACAATGTTGATATGATACCTAAGTTTATCATCGCCAATGGTGGTTTGGTCCGTGTTTTGATACACACAGATGTTACTAAGTATCTTCAT TTTAAGGCTGTTGATGGTAGTTTTGTGTACAACAAAGGAAAGATCTACAAAGTCCCAGCAACTGATGTGGAAGCACTAAAATCACCATTGATGGGATTGT TTGAGAAACGTCGTGCTCGAAAGTTCTTCATTTATGTCCAAGACTATGAGGAAAATGATCCCAAATCTCATGAGGGTCTGGACTTGACCAAAGTTACAGC AAGAGAGGTTATCTCAAAATACGGGCTTGAAGATGATACAATTGACTTTATTGGTCATGCCTTGGCTCTTCATCTTGATGATAGTTATTTAGATCAACCA GCTTCGGATTTTGTGAAGAGAATGAAGCTTTATGCAGATTCTTTGGCACGTTTCCAAGGAGGATCACCCTATATCTATCCACTTTATGGACTAGCAGAAT TGCCTCAGTCATTTGCACGCTTAAGTGCAGTATATGGTGGAACTTACATGCTCAACAAGCCAGAATGTAAGGTAGAGTTTGACGAGAGTGGTAAAGCCAT TGGTGTCACCTCAGAAGGAGAAACTGCTAAATGCAAGAAAGTTGTTTGTGACCCATCATATTTGCCAAATAAGGTTAAGAATGTTGGGAAAGTTGCTCGT GCTATTTGTATAATGAGCCATCCTATTCCTGCCACTAGTGATTCTCACTCTGCGCAAGTTATTCTGCCACAGAAGCAACTTGGACGCAAATCAGACATGT ACCTCTTCTGCTGTTCTTATGCTCACAATGTTGCTCCACAAGGAAAATTCATTGCTTTTGTTTCAGCTGAAGCTGAGACAGACAACCCTGAGATAGAACT GAAGCCAGGAATTGACTTGTTGGGTCCAGTAGATGAGATTTTCTATGAAACTTATGACAGATATGTGCCCATAAATACTATGAAAGATGACAATTGCTTC ATTTCTACTAGCTACGACGCAACAACACATTTTGAGACCACAGTACAAGATGTTATTGCAATGTACAGTGAGATAACTGGAAAGACTCTTGATCTTTCTG TGGATTTGAGTGCTGCAAGCGCTGCTGCTGAATAA
AA sequence Show only first row Show all	>Potri.007G115300.1 pacid=42766596 polypeptide=Potri.007G115300.1.p locus=Potri.007G115300 ID=Potri.007G115300.1.v4.1 annot-version=v4.1 MDENYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWKRFRGSDTPPESLGASKEYNVDMIPKFIIANGGLVRVLIHTDVTKYLH FKAVDGSFVYNKGKIYKVPATDVEALKSPLMGLFEKRRARKFFIYVQDYEENDPKSHEGLDLTKVTAREVISKYGLEDDTIDFIGHALALHLDDSYLDQP ASDFVKRMKLYADSLARFQGGSPYIYPLYGLAELPQSFARLSAVYGGTYMLNKPECKVEFDESGKAIGVTSEGETAKCKKVVCDPSYLPNKVKNVGKVAR AICIMSHPIPATSDSHSAQVILPQKQLGRKSDMYLFCCSYAHNVAPQGKFIAFVSAEAETDNPEIELKPGIDLLGPVDEIFYETYDRYVPINTMKDDNCF ISTSYDATTHFETTVQDVIAMYSEITGKTLDLSVDLSAASAAAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G09550			GDP dissociation inhibitor fam...		Potri.007G115300 [exp]	0	1
AT5G63060			Sec14p-like phosphatidylinosit...		Potri.012G088350 [exp]	4.89	0.8644
					Potri.005G071951 [exp]	7.14	0.7892
AT5G50790		SWEET10, AtSWEE...	Nodulin MtN3 family protein (....		Potri.012G103200 [exp]	10.58	0.7274
					Potri.015G072666 [exp]	12.32	0.8036
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.006G253300 [exp]	15.00	0.6882
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.004G133100 [exp]	19.23	0.7975
					Potri.014G061800 [exp]	19.87	0.6197
AT5G15110			Pectate lyase family protein (...		Potri.015G064700 [exp]	20.00	0.6981
					Potri.004G188950 [exp]	20.17	0.7975
					Potri.014G114801 [exp]	21.07	0.7975

Compare expression of checked genes

Potri.007G115300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.