Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09730 427 / 2e-135 Cysteine proteinases superfamily protein (.1.2) AT4G33620 422 / 3e-135 Cysteine proteinases superfamily protein (.1) AT1G10570 117 / 3e-27 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT1G60220 114 / 4e-26 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT3G48480 81 / 2e-16 Cysteine proteinases superfamily protein (.1) AT4G15880 73 / 4e-13 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT4G00690 66 / 3e-11 ULP1B UB-like protease 1B (.1) AT3G06910 62 / 1e-09 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G044000 [exp] 1102 / 0 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.005G155600 [exp] 431 / 2e-136 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.002G105700 [exp] 432 / 5e-136 AT1G09730 580 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.010G040600 [exp] 136 / 2e-33 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Potri.015G090800 [exp] 88 / 9e-19 AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) Potri.010G180300 [exp] 77 / 3e-15 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1) Potri.008G221500 [exp] 52 / 2e-06 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020445 [exp] 450 / 4e-145 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10000917 [exp] 385 / 2e-120 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10030867 [exp] 136 / 1e-33 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10030622 [exp] 120 / 4e-28 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10035097 [exp] 69 / 9e-13 AT3G48480 146 / 4e-43 Cysteine proteinases superfamily protein (.1) Lus10023104 [exp] 62 / 1e-09 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10002875 [exp] 58 / 2e-08 AT4G15880 404 / 2e-136 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02902 [poplar] [flax] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.007G115400.1 pacid=42766346 polypeptide=Potri.007G115400.1.p locus=Potri.007G115400 ID=Potri.007G115400.1.v4.1 annot-version=v4.1 ATGGCTCGTTCGAGTCAGAAATTTAGTGTGTTCGAGTTCGACGAAGAAGAAGAAAAAGTCGAGAAGGAGTCTGCGAGGTTCGTCGGCAAATTTCGGATCC AAAAGAGAAGACGAAACGGCAACAACAAGGACGACGACACTTCTCCTCGCACTAAGTATAAGTCTCTTCAGTGCTTTGGAGGATGTACTGGGGCTGTAAA AATAGAAAGTAGCAATGAACCTATTGATATAGATGATGAACCAATCGATGTTGACTGTGGAGTTGCAGGAGAGACCAATTCCTTATGCAAGGGAAACAGT AACGAAGTAGTAGATATCGATCCTACCGACGTGGAGGGTCAATGCCAATATTCTGTTTCAGCTCCTGCTTGCATGCCACAAGAAGATTGTTCTGTCAAGG AGATTTCTCGGCTGGATAGGTTATTCAGATTCTCAAATTATGAGAATGAGTCAGTTGGTAGGATTTCGGATAATGATGTTGGGATTGAAATGAGCTCATC CACTTCTGTCTCTACTCTTGTGGAGAATGCAGGAAACCAAGTGCTAGAGCGTGGTTCTGTTGGACATAAAATTGATTACACAAATAATACAGTTGCTGTT TTCCCTGACTATATCCTGTGTGGCGATGTATATGGTGCAGAGTATTGCTTAACTTTCTCAGGAAGCAGCATCAGAATGGAGGGTTCAACTGCAAATGGGG TCAAGGGAATATTTAATGCTGAGTGGACTCTTGATGATATTATTAGTATTGAGTCAGAATGGTGTGGAATGGTTACGACTGCTATGGTTTATATCTGTTT TAAATCAAAGGTTTCTCAAGGAGCTGGAAATACAAATGATACTTCAGGTGTTGACAAGTTGAAGTTTTCAGTTTGTGATCCTCTTTGGAATGAAGGAGAG GAAGCAATCAAATCATTGCATGTCAGATACAGGGATAGCTGGAATGTTACTTCTGACTCTGATTGGAAAAATGATGGAAATGCCTTTTTTGGGCACAATG GGATGGTCATCTCAAAGCCTTATTTTCCTGTTCTTCATGAGACATTTGAAGAGGTTATCTATCCTAAAGGTGATCCTGATGCTGTTTCTATTAGTAAGAG AGATGTGGAGCTTCTACGCCCAGAGACATTCATCAATGATACCATCATTGACTTTTATATCCTGTATTTAAAGAGTAAACTTAAGCCTGGGGACAAGCAT AGGTTCCACTTTTTCAATAGCTTTTTCTTTCGGAAGCTTGCTGACCTAGACAAGGGCCCATCTAATGCTTGTGGAGGCAGGCTAGCTTTTCAACGTGTTC ATAAATGGACAAGAAAGATGAATCTTTTCGAGAAAGATTACATTTTCATTCCTATAAATTACAGTCTTCACTGGAGTTTGATTGTCATTTGTCATCCTGG AGAAGTGGTTCATTCCAGAGAAGATGAAGGCAGAAATTCAGTTAAGGTACCATGCATCTTACACATGGATTCTATCAGAGGAAGTCACAGGGGCCTCAAG AATCTTATTCAGAGTTATCTGTATGAAGAGTGGAGAGAAAGGCATAATGGGACAGTGGATGATACATTGTCGAAGTTCATACATTTACGGTTTGTCCCAC TTGAGCTTCCACAGCAGGAAAATTCATATGACTGTGGCCTGTTTGTGCTCCATTATGTTGAACGTTTTCTTGAGGAAGCTCCTATTAATTTCAGTCCTTT CAGGATAACAGAGGTTTCAAACTTCCTTAATAGAAATTGGTTTCTACCTGTGGAGGCCTCTCTGAAAAGGGCATGCATCCAGAAGTTGATCCGTGAAATT CTTGAAGATCGGTCATCTACCCAATTTTCTGATCCATATGAAGAAGAAACTGGAGTTGAGTTTCTTGAGGAGATATCTAGTTCAGTATCTGGTACTGGTA CTGATACTGATACGGGGATTAATATCTCAGTCACAACGAAATCTCCAATGAGAGTTGCACATCAACAACAACCTGGAGAACTAGGATTGAATTCCAGGAA TTTGTTCAAACCAGGAACTAGTGCAAGGTCCTTTTCCAATGAAGATTGCTGGCAGACAGGAACAATTCATGGGAGCAGTTGCATGTCACCAGTAGAGGAA ATTGGTGAGCGAATTTCTGATTCATCATCAAACACAGGAGATTATTTGCAACATACTGGCTTGGCAACTGAATTTCCCTCAACCACATTTTCTCATAAAA ATCTTAGATCTCTCGGTTCATCATCAAGCAATAAGAAATATATGCAGATTGAGGAACCTTATGATGATTCCAGTTCTGAAGCATCTATCAGTGGATCCCT TAAATCATCAGAGATAGGGGTAGGGGTTGATGAAGATCATTTTTTTTCCCAGATTGAGGGATCTGATCATCAAACACAAACTAATTGCCATGAACTCTCT TCAAAATCAACCGAGTCTGAGGAACTTGCTGATTGTGTTGTTGAGGACTCGGAAGAGGGAAACAGCATGCACAACGACCAAGTGGCAAATGATTCACCAT CCTCCCTTCATTGCAATGACCTTGTTGCATCAATTGATGCCATTAAGGCTACCGAAAACATTTTGCGAAAAGTCTGGAAACCTGTGTGCAATGTAGATTC GGCATCAGATGAACAGACTAGAAAGGACAAGCTTACATCTTCTGATGGCGCATGA
AA sequence Show only first row Show all	>Potri.007G115400.1 pacid=42766346 polypeptide=Potri.007G115400.1.p locus=Potri.007G115400 ID=Potri.007G115400.1.v4.1 annot-version=v4.1 MARSSQKFSVFEFDEEEEKVEKESARFVGKFRIQKRRRNGNNKDDDTSPRTKYKSLQCFGGCTGAVKIESSNEPIDIDDEPIDVDCGVAGETNSLCKGNS NEVVDIDPTDVEGQCQYSVSAPACMPQEDCSVKEISRLDRLFRFSNYENESVGRISDNDVGIEMSSSTSVSTLVENAGNQVLERGSVGHKIDYTNNTVAV FPDYILCGDVYGAEYCLTFSGSSIRMEGSTANGVKGIFNAEWTLDDIISIESEWCGMVTTAMVYICFKSKVSQGAGNTNDTSGVDKLKFSVCDPLWNEGE EAIKSLHVRYRDSWNVTSDSDWKNDGNAFFGHNGMVISKPYFPVLHETFEEVIYPKGDPDAVSISKRDVELLRPETFINDTIIDFYILYLKSKLKPGDKH RFHFFNSFFFRKLADLDKGPSNACGGRLAFQRVHKWTRKMNLFEKDYIFIPINYSLHWSLIVICHPGEVVHSREDEGRNSVKVPCILHMDSIRGSHRGLK NLIQSYLYEEWRERHNGTVDDTLSKFIHLRFVPLELPQQENSYDCGLFVLHYVERFLEEAPINFSPFRITEVSNFLNRNWFLPVEASLKRACIQKLIREI LEDRSSTQFSDPYEEETGVEFLEEISSSVSGTGTDTDTGINISVTTKSPMRVAHQQQPGELGLNSRNLFKPGTSARSFSNEDCWQTGTIHGSSCMSPVEE IGERISDSSSNTGDYLQHTGLATEFPSTTFSHKNLRSLGSSSSNKKYMQIEEPYDDSSSEASISGSLKSSEIGVGVDEDHFFSQIEGSDHQTQTNCHELS SKSTESEELADCVVEDSEEGNSMHNDQVANDSPSSLHCNDLVASIDAIKATENILRKVWKPVCNVDSASDEQTRKDKLTSSDGA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09730			Cysteine proteinases superfami...		Potri.007G115400 [exp]	0	1
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.019G021200 [exp]	1.73	0.8544
AT1G60220		ULP1D, OTS1	OVERLY TOLERANT TO SALT 1, UB-...		Potri.010G040600 [exp]	2.00	0.8794
AT1G72650	MYB	TRFL6	TRF-like 6 (.1.2)		Potri.001G170200 [exp]	2.44	0.8737
AT4G02210			unknown protein		Potri.002G200600 [exp]	4.24	0.8287
AT4G31430			unknown protein		Potri.006G275200 [exp]	5.00	0.8496
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Potri.003G039475 [exp]	10.19	0.8517
AT5G44090			Calcium-binding EF-hand family...		Potri.002G035800 [exp]	11.66	0.8438
AT1G03750		SWI2, SNF2, CHR...	CHROMATIN REMODELING 9, switch...		Potri.017G012400 [exp]	13.07	0.8283	CHR912
AT3G48195			Phox (PX) domain-containing pr...		Potri.012G082500 [exp]	13.41	0.8075
AT4G13730			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G057100 [exp]	14.45	0.8364

Compare expression of checked genes

Potri.007G115400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.