Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64370 720 / 0 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1) AT2G27450 88 / 3e-19 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G12040 62 / 3e-10 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT3G44320 53 / 2e-07 AtNIT3, NIT3 nitrilase 3 (.1) AT5G22300 50 / 2e-06 AtNIT4, NIT4 nitrilase 4 (.1) AT4G08790 49 / 3e-06 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) AT3G44300 49 / 3e-06 AtNIT2, NIT2 nitrilase 2 (.1) AT3G44310 43 / 0.0003 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G201400 [exp] 84 / 5e-18 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.006G207700 [exp] 61 / 7e-10 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.006G222900 [exp] 58 / 4e-09 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.016G074200 [exp] 56 / 2e-08 AT5G22300 358 / 1e-121 nitrilase 4 (.1) Potri.004G199600 [exp] 43 / 0.0002 AT5G22300 578 / 0.0 nitrilase 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007065 [exp] 683 / 0 AT5G64370 673 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Lus10020436 [exp] 676 / 0 AT5G64370 669 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Lus10020627 [exp] 87 / 8e-19 AT2G27450 556 / 0.0 nitrilase-like protein 1 (.1.2) Lus10004862 [exp] 69 / 2e-12 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2) Lus10026464 [exp] 60 / 1e-09 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10005201 [exp] 53 / 2e-07 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 51 / 9e-07 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10030303 [exp] 44 / 0.0001 AT4G08790 474 / 1e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [poplar] [flax] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Potri.007G115900.1 pacid=42766324 polypeptide=Potri.007G115900.1.p locus=Potri.007G115900 ID=Potri.007G115900.1.v4.1 annot-version=v4.1 ATGGACAATATTGAAGAAGAGATTGCAGCACAAAATGGCAATTTGGAAGAGAGCTCAAGTGCAAAAGATGGTTCAATTTGTGGGTATGAGTCCCTTCACC ACCTTCTAAGTGTCAATCTCAAGCCTCATCTATACAAGGAAGTCAGTCGCTTGCTTATTGGACTGAATTGTGGAAAACCTCTCGAGCTTATTGCTCTCCC GGAATCTGCAAAAGCCCTCTCTTCGAAACATGATTTTGACCTCCAGGCCTTTTCCTTTGATGCTGACAAGGAGTTGGTGCGAGAACCTCGAGTAGTCAGG GTGGGTCTCATTCAGAACTCTGTAGCTCTTCCAACAACTGCCCCCTTATTGGACCAAAAAAGAGCTATCTTTCAGAAATTGAAGCCAATCATTGATTCTG CAGGTGCTTCAGGAGTCAACATATTATGCTTACAGGAAGCATGGATGATGCCATTTGCATTTTGTACCCGGGAGAAGAGGTGGTGTGAATTTGCAGAGCC TGTTGATGGGGAATCAACACAGTTTCTTCAGGAATATGCGCGGAAATATAACATGGTCATTATAAATCCAATTCTAGAGAGAGATGTTAATCATGGAGAG ACTCTCTGGAACACTGCTATTATAATTGGAAACCGTGGAAACATAATTGGCAAGCATCGGAAGAACCATATACCTAGAGTCGGTGATTTCAATGAAAGCA CGTATTACATGGAAGGAAATACCGGGCATCCTGTGTTTGAGACGGCTTATGGAAAGATTGCTGTCAATATATGTTATGGGAGGCACCATCCATTGAATTG GTTAGCATTTGGCCTGAATGGTGCAGAGATTGTTTTCAATCCTTCTGCAACTGTTGGTGAACTCAGCGAACCAATGTGGCCTATTGAGGCTCGTAATGCT GCCATAGCTAACAGCTACTTTGTTGGGTCAATCAATCGTGTTGGAACTGAGACATTCCCTAATCCATTTACTTCCGGCGATGGGAAGCCACAACATGCAG ATTTTGGGCATTTCTACGGGTCTAGTCATTTTTCAGCTCCAGATGCTTCTTGCACACCCTCCCTCTCACGTTACAAGGATGGATTATTGATCTCAGACAT GGATCTAAACCTCTGTAGGCAGCTGAAAGACAAGTGGGGATTTCGGATGACTGCTCGGTATGAGTTATACGCTGACATGCTTGCCCGTTACTTGAAGCCA GACTTTGAGCCCCAAGTCATCTCCGATCCCCTGTTACATAAGAAGTCTCTGTAA
AA sequence Show only first row Show all	>Potri.007G115900.1 pacid=42766324 polypeptide=Potri.007G115900.1.p locus=Potri.007G115900 ID=Potri.007G115900.1.v4.1 annot-version=v4.1 MDNIEEEIAAQNGNLEESSSAKDGSICGYESLHHLLSVNLKPHLYKEVSRLLIGLNCGKPLELIALPESAKALSSKHDFDLQAFSFDADKELVREPRVVR VGLIQNSVALPTTAPLLDQKRAIFQKLKPIIDSAGASGVNILCLQEAWMMPFAFCTREKRWCEFAEPVDGESTQFLQEYARKYNMVIINPILERDVNHGE TLWNTAIIIGNRGNIIGKHRKNHIPRVGDFNESTYYMEGNTGHPVFETAYGKIAVNICYGRHHPLNWLAFGLNGAEIVFNPSATVGELSEPMWPIEARNA AIANSYFVGSINRVGTETFPNPFTSGDGKPQHADFGHFYGSSHFSAPDASCTPSLSRYKDGLLISDMDLNLCRQLKDKWGFRMTARYELYADMLARYLKP DFEPQVISDPLLHKKSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64370		PYD3, BETA-UP	PYRIMIDINE 3, beta-ureidopropi...		Potri.007G115900 [exp]	0	1
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	2.44	0.9163
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	4.89	0.9055
AT3G19990			unknown protein		Potri.007G001200 [exp]	13.26	0.8403
AT3G19580	C2H2ZnF	AZF2	zinc-finger protein 2 (.1.2)		Potri.009G089400 [exp]	15.23	0.9003
AT5G13330	AP2_ERF	RAP2.6L	related to AP2 6l (.1)		Potri.001G067600 [exp]	17.26	0.9119
AT5G48100		LAC15, TT10, AT...	TRANSPARENT TESTA 10, LACCASE-...		Potri.005G200500 [exp]	24.81	0.8902
AT2G45900			Phosphatidylinositol N-acetygl...		Potri.001G103400 [exp]	28.03	0.9077
AT1G02070			unknown protein		Potri.005G158400 [exp]	29.39	0.9045
AT4G32250			Protein kinase superfamily pro...		Potri.006G255700 [exp]	34.49	0.9049
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.009G098100 [exp]	36.46	0.9014

Compare expression of checked genes

Potri.007G115900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.