Plant FIBer expression Database

Potri.007G116100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22570 337 / 4e-118 NIC2, ATNIC1 A. THALIANA NICOTINAMIDASE 1, nicotinamidase 1 (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G147400
[exp]
355 / 3e-125 AT2G22570 350 / 3e-123 A. THALIANA NICOTINAMIDASE 1, nicotinamidase 1 (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035945
[exp]
368 / 2e-130 AT2G22570 342 / 3e-120 A. THALIANA NICOTINAMIDASE 1, nicotinamidase 1 (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00857 Isochorismatase Isochorismatase family
Representative CDS sequence
>Potri.007G116100.1 pacid=42766807 polypeptide=Potri.007G116100.1.p locus=Potri.007G116100 ID=Potri.007G116100.1.v4.1 annot-version=v4.1
ATGGTGTCCCAAACTGTTGATCTTTTGAAAAATGAACTGCCTCTTGAGCAGGAGTCTGTGGTTTTGCCTGAAGATGTTGTGAATGGTCTTGTTCTTGTGG
ATATCATCAATGGTTTTTGCTCTGTTGGTGCTGGAAATCTGGCTCCGAGAGAACCCAACATGCAGATTACAGGAATGATCAATGAATCAGCAAGGCTGGC
CAGGTTGTTCTGTGACAAGAAACTGCCTGTTCTGGCATTCCTTGATTCTCATCAACCTAACAAGCCTGAGGAACCATACCCCCCTCATTGTATTGCTGGC
ACGGATGAATCCAAGCTGGTTCCTGCACTGCAATGGATAGAGAATGAACCAAATGTCACAATCCGACGCAAAGATTGCTTTGATGGATTCTTGGGCTCAA
TTGAGGATGATGGCTCCAATGTTTTCGTAGATTGGGTGAAGAACAATCATATAAAAGCTATATTGGTGGTGGGCATATGCACAGACATCTGTGTTCTGGA
TTTTGTCTGTTCAACAATATCTGCCAGAAACCGTGGATTTCTAGCCCCTCTGGAGGATGTAATAGTGTATTCTCGTGGCTGTGCTACCTTCGATGTTCCT
CTTCATGTTGCAAGAAACACCAAAGGTGCCTTATCTCATCCCCAGGAGCTGATGCATCATGTGGGCCTTTACATGGCAAAGGAAAGGGGAGCCATAATAG
CAAATGAGGTGTCACTGGTTACACCAAAGAAACCATGA
AA sequence
>Potri.007G116100.1 pacid=42766807 polypeptide=Potri.007G116100.1.p locus=Potri.007G116100 ID=Potri.007G116100.1.v4.1 annot-version=v4.1
MVSQTVDLLKNELPLEQESVVLPEDVVNGLVLVDIINGFCSVGAGNLAPREPNMQITGMINESARLARLFCDKKLPVLAFLDSHQPNKPEEPYPPHCIAG
TDESKLVPALQWIENEPNVTIRRKDCFDGFLGSIEDDGSNVFVDWVKNNHIKAILVVGICTDICVLDFVCSTISARNRGFLAPLEDVIVYSRGCATFDVP
LHVARNTKGALSHPQELMHHVGLYMAKERGAIIANEVSLVTPKKP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22570 NIC2, ATNIC1 A. THALIANA NICOTINAMIDASE 1, ... Potri.007G116100
[exp]
0 1
AT2G36690 2-oxoglutarate (2OG) and Fe(II... Potri.017G049000
[exp]
1.41 0.9120
AT3G10120 unknown protein Potri.016G079700
[exp]
2.44 0.8879
AT2G38740 Haloacid dehalogenase-like hyd... Potri.003G086900
[exp]
2.82 0.8946
AT2G46690 SAUR-like auxin-responsive pro... Potri.002G176400
[exp]
4.24 0.8805
AT1G77920 bZIP bZIP transcription factor fami... Potri.002G090700
[exp]
7.74 0.8720 TGA3.1
AT3G13540 MYB ATMYB5, ATM2 myb domain protein 5 (.1) Potri.003G219900
[exp]
8.00 0.8864
AT1G72690 unknown protein Potri.017G119600
[exp]
8.36 0.8676
AT5G04250 Cysteine proteinases superfami... Potri.008G036900
[exp]
8.36 0.8937
AT1G08230 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRAN... Potri.005G219300
[exp]
10.58 0.8873
AT4G32180 ATPANK2 pantothenate kinase 2 (.1.2.3) Potri.012G081600
[exp]
12.00 0.8377

Potri.007G116100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.