Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G64390 225 / 3e-62 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT5G09560 180 / 7e-48 RNA-binding KH domain-containing protein (.1) AT2G22600 173 / 2e-45 RNA-binding KH domain-containing protein (.1) AT1G51580 167 / 1e-43 RNA-binding KH domain-containing protein (.1) AT5G53060 137 / 2e-33 RNA-binding KH domain-containing protein (.1.2) AT5G15270 136 / 2e-33 RNA-binding KH domain-containing protein (.1.2) AT5G46190 120 / 6e-28 RNA-binding KH domain-containing protein (.1) AT4G18375 100 / 1e-21 RNA-binding KH domain-containing protein (.1.2) AT1G14170 66 / 4e-11 RNA-binding KH domain-containing protein (.1.2.3) AT2G03110 59 / 8e-10 RNA binding;nucleic acid binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G042500 [exp] 916 / 0 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.007G012000 [exp] 195 / 6e-54 AT2G22600 325 / 3e-104 RNA-binding KH domain-containing protein (.1) Potri.007G011900 [exp] 180 / 1e-46 AT2G22600 295 / 2e-87 RNA-binding KH domain-containing protein (.1) Potri.010G251700 [exp] 158 / 3e-40 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.002G112200 [exp] 156 / 2e-39 AT5G53060 243 / 7e-71 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 147 / 4e-37 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 146 / 1e-36 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.015G011100 [exp] 139 / 5e-34 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 134 / 2e-32 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035640 [exp] 528 / 2e-177 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10010754 [exp] 507 / 4e-169 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10030689 [exp] 155 / 8e-40 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10005232 [exp] 152 / 2e-38 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10034831 [exp] 139 / 1e-33 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10023300 [exp] 129 / 8e-31 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10038509 [exp] 128 / 2e-30 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10022390 [exp] 127 / 3e-30 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10007236 [exp] 124 / 6e-29 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10005915 [exp] 122 / 1e-28 AT5G53060 599 / 0.0 RNA-binding KH domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.007G116300.3 pacid=42766565 polypeptide=Potri.007G116300.3.p locus=Potri.007G116300 ID=Potri.007G116300.3.v4.1 annot-version=v4.1 ATGGCAAGCAGCTTCAGTCCTTTTCTCTCTCCACCAGCAAAACGCCCCGTATATTACTCCACCATCTTGCCCGACCCGAACCCGAATTCCACAAACGGAT ACTCCGCAAACAAACGCTCCAAACCCCACCCCTCTACTTCAGCTGCTCCGTCACCAGTCCCGTCGGGCCACGTCTTGTTCCGTCTACTCTGTCACGAGTC AAGAATTGGTGGCATTATAGGAAAGGGCGGCAACATAATAAAAGGCTTGCAACAACAAACCGGAGCTAAGATCCGGATAGAAGATGCTCCACTCGAATCA CCGGATCGGGTGATAACGATAGTTGGTTCAGTTACGCAATCGTCGGTGGTATTTAGTGGAATTGGGAGTGCAATCGAGGTTTCCAAGGGGCAGGAGGCAT TGGTTAGGGTTTTTGAGAGGATATTAGAGGTGGCGGCGGAGAGTGATTCGGTGGCGGGTGGGTTGGTTTCTTGCAGGTTGTTGGCGGAGATAAGTTCGGT TGGGGCGGTTATTGGGAAAGGGGGAAAAACAGTGGAGAAGATTAGGAAAGATTGTGGGTGTAAAGTTAAGGTTTTGATTGATAAATTACCTGCTTGTGCT TCTTCTAATGAAGAGATGATTGAGATTGAAGGGGATGTTTCAGCTGTAAAGAAAGGACTTGTTGCGGTTTCTCACCGCCTTCAAGATTGTCAACCGGTTG ATAAAACAAGGGTGATCAGCAGCAAACCTGTTGAGGCAGTTTCCAGAGTCTCTTTTCCTGAAGTGGGTGTAGAAATTCTTCCACAGCATTCTGCAGTGCG ACCCACCATAGCACAACATTCCGTAGCGCCACCCACTGTAACGAATAGCTCCATTGATTATGCTTCAGGAACTCATCTTTTTTCGTTGGAGTCCGAGAGG GTCAGCACTCTGGACACAAGTACACCACAACAGCAAGTGGTTTTTAGAATTCTGTGTAATAATGATAGGGTTGGGGGTGTTATTGGAAAAGGTGGCAACA TAGTCACGGCTCTTCAGAATGAGACAGGTGCTACTATAAGCATTGGACCTAAGGTGGCTGGGTGTGATGAGCGACTAATCACTGTTACTGCATCTGAGAA CCCAGAGTCTCGGTACTCAGCTGCACAGAAGACTGTTGTGCTTGTTTTCTCGAGGGTTGTGGAGTCCGTCATTGAAAAGGGTCTAGATCCAGGCTCAAGC GAGGGGTCCCCTGTTAGTGTGAGGCTCGTGGTTTCCCCAAACCAAGTTGGCTGTTTGTTGGGAAAAGGAGGCACAATAATTTCAGAAATGCGGAAGGCAA CCAGTACCAGCATACGAATAATAGGGCGTGACCAGGGTAACCCTAAGTGTGTGCCAGAGAATGATCACGTGGTAGAGATTTTGGGAGATTTTTTGAATGT GAAAGACTCAATATACCACATTACTGGAAGACTCAGAGATAATCTTTTCTCTAGCATTCTGGGTACTCCTGGAGCAAGGAGCAGTTCTTCTGTATTAGCT GAGACCAGCCCCTATGTGAGATCGATGGACCCAGTGAGGGATGCCAAGAGGGATTCGCTGAGGGATCCATTGTGGGAGCCACTGAGGGATATTACGAGGG ATCCATTGAGAGACTCACTGAGGGATTTTATGAGGGATCCATTGAGAGACCCTCTGAGGGATGAATTTAGGGATTCGTTGAGGGAAACTGTGAGGGATCC TTTGAGGGAACCAGTGAGGGATCCTTTGAGGGGACCTGGGAGGGGTCCATTGAGGGAGCTAGGGAGGGATTCTGCCTCTTTTTTGCAGCCAATGGTGGGC ATTTCTCATAATCTAAATCGCCAAACTGTTATAACACAGAGTATGGATCATCTTGGATTTTCACGTAGTTTAGATCATTCTCCTTCACCAAGGTTATGGG GATCACAGACAATACCTGGAGTAAATCCACGGGGCATATCAGATCTCAGTGGAGGACTGCCTTCTTTTAAAGCTGGCCTAGATGATCTTGTCAGTGGAGG TAAGTCTGCTTTTGTTACAAATACAACTGTAGAGATCGTAATTCCTGAGCATACTTTCGGCTCTGTATATGGGGAGAATGGTAGCAATCTAGCTCGTTTG AGACAGGTATGCACTTTTGCCTTTTATTTTTCTGTTAGTTTTGCTTCTGCTGTCATTGTGTTGTCCAAGATAGTTAAACAAGTAAATCAATATGATTTAT TACTCATTGAATGGAGTTCTCATTGTCACACTGATAATCCTAAAGGCTTTTTAGAAGTTGCTTCTTCAAGCATTACTGTTATTATTATTTTGGTTCATTA TTTTGAAGGAGAGGAAAAGAATTTTGACACATTGACCGAGTTTAAAACCATCAAAAGAATAGCACTTAAGTTTAATTCTCAAGCATCAATGTGCCTTCTC CTTGGCCAGACTATTCTGGTTAATGAGATAAGGAACATATTCTTTCCCTAG
AA sequence Show only first row Show all	>Potri.007G116300.3 pacid=42766565 polypeptide=Potri.007G116300.3.p locus=Potri.007G116300 ID=Potri.007G116300.3.v4.1 annot-version=v4.1 MASSFSPFLSPPAKRPVYYSTILPDPNPNSTNGYSANKRSKPHPSTSAAPSPVPSGHVLFRLLCHESRIGGIIGKGGNIIKGLQQQTGAKIRIEDAPLES PDRVITIVGSVTQSSVVFSGIGSAIEVSKGQEALVRVFERILEVAAESDSVAGGLVSCRLLAEISSVGAVIGKGGKTVEKIRKDCGCKVKVLIDKLPACA SSNEEMIEIEGDVSAVKKGLVAVSHRLQDCQPVDKTRVISSKPVEAVSRVSFPEVGVEILPQHSAVRPTIAQHSVAPPTVTNSSIDYASGTHLFSLESER VSTLDTSTPQQQVVFRILCNNDRVGGVIGKGGNIVTALQNETGATISIGPKVAGCDERLITVTASENPESRYSAAQKTVVLVFSRVVESVIEKGLDPGSS EGSPVSVRLVVSPNQVGCLLGKGGTIISEMRKATSTSIRIIGRDQGNPKCVPENDHVVEILGDFLNVKDSIYHITGRLRDNLFSSILGTPGARSSSSVLA ETSPYVRSMDPVRDAKRDSLRDPLWEPLRDITRDPLRDSLRDFMRDPLRDPLRDEFRDSLRETVRDPLREPVRDPLRGPGRGPLRELGRDSASFLQPMVG ISHNLNRQTVITQSMDHLGFSRSLDHSPSPRLWGSQTIPGVNPRGISDLSGGLPSFKAGLDDLVSGGKSAFVTNTTVEIVIPEHTFGSVYGENGSNLARL RQVCTFAFYFSVSFASAVIVLSKIVKQVNQYDLLLIEWSSHCHTDNPKGFLEVASSSITVIIILVHYFEGEEKNFDTLTEFKTIKRIALKFNSQASMCLL LGQTILVNEIRNIFFP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G64390		HEN4	HUA ENHANCER 4, RNA-binding KH...		Potri.007G116300 [exp]	0	1
AT4G18060			SH3 domain-containing protein ...		Potri.011G077500 [exp]	3.16	0.9000
AT3G56250			unknown protein		Potri.013G083700 [exp]	5.19	0.8924
AT5G16650			Chaperone DnaJ-domain superfam...		Potri.013G078200 [exp]	5.29	0.8529
AT1G76065			LYR family of Fe/S cluster bio...		Potri.014G181400 [exp]	5.47	0.8813
AT2G04340			unknown protein		Potri.001G240904 [exp]	6.00	0.8660
AT1G67410			Exostosin family protein (.1)		Potri.008G034500 [exp]	6.63	0.8873
AT1G62930		RPF3	RNA processing factor 3, Tetra...		Potri.006G257300 [exp]	7.93	0.8377
AT4G24990		ATGP4	Ubiquitin family protein (.1)		Potri.015G101200 [exp]	8.00	0.8719
AT5G45660			unknown protein		Potri.011G076600 [exp]	8.36	0.8641
AT1G72480			Lung seven transmembrane recep...		Potri.001G166500 [exp]	9.79	0.8530

Compare expression of checked genes

Potri.007G116300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.