Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21175 228 / 2e-73 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT1G51600 220 / 4e-70 GATA GATA28, TIFY2A, ZML2 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) AT4G24470 196 / 1e-60 GATA GATA25, TIFY1, ZIM Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) AT5G02810 57 / 9e-09 APRR7, PRR7 pseudo-response regulator 7 (.1) AT2G46670 54 / 9e-09 CCT motif family protein (.1) AT5G61380 56 / 2e-08 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT2G46790 55 / 2e-08 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G60100 54 / 8e-08 APRR3 pseudo-response regulator 3 (.1.2.3) AT5G24470 54 / 9e-08 APRR5 pseudo-response regulator 5 (.1) AT1G08000 51 / 3e-07 GATA GATA10 GATA transcription factor 10 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G110900 [exp] 237 / 5e-77 AT4G24470 253 / 2e-83 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.005G152800 [exp] 235 / 2e-76 AT4G24470 264 / 1e-87 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.010G251600 [exp] 223 / 3e-71 AT1G51600 298 / 9e-101 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.002G110800 [exp] 207 / 2e-64 AT3G21175 230 / 1e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.005G152500 [exp] 200 / 1e-61 AT3G21175 208 / 4e-65 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042200 [exp] 183 / 6e-55 AT3G21175 171 / 1e-50 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.007G116700 [exp] 175 / 1e-51 AT3G21175 155 / 3e-44 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042300 [exp] 75 / 1e-16 AT1G51600 71 / 9e-16 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.008G046200 [exp] 63 / 9e-11 AT5G02810 452 / 1e-148 pseudo-response regulator 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028166 [exp] 239 / 3e-74 AT4G24470 233 / 4e-72 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10002412 [exp] 225 / 4e-72 AT4G24470 231 / 6e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10032839 [exp] 223 / 1e-71 AT4G24470 231 / 8e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10042865 [exp] 157 / 9e-46 AT4G24470 131 / 6e-36 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10019077 [exp] 60 / 1e-09 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10000566 [exp] 59 / 1e-09 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 59 / 2e-09 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 58 / 4e-09 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015571 [exp] 56 / 2e-08 AT2G46790 365 / 1e-117 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) Lus10008878 [exp] 56 / 2e-08 AT5G24470 296 / 8e-91 pseudo-response regulator 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger CL0167 [poplar] [flax] PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.007G116550.1 pacid=42766426 polypeptide=Potri.007G116550.1.p locus=Potri.007G116550 ID=Potri.007G116550.1.v4.1 annot-version=v4.1 ATGCCTAATTCCAATGGGCAAGCAGCAGCAGCAGTGCCAGTACAAATGAATCATATAGAAGCCCAATTAGTAGATGAGGAGGATGGGGATAACAATAATA TTGCTGGTGGAGGAGAGGAGTCAATAGATAACACCAACAGCATTCAATTTGAAGATGGTGGTTGTAGTGGTGTTGTTGGGGAGGCTGTAGCAGCAAGTGA TATGTATGTTGGTACTAATGGTGGTGGTGGGGCTGATTATGGTTTAGTGACTGCAAACAATGACCAACTCACTCTGTCTTTTCAGGGTGAAGTTTATGTT TTTGATGCTGTCGCTCCTGACAAGGTGCAGGCAGTGTTGTTGCTTTTGGGTGGCTATGAAATCCCTTCTGGCATTCCCGCCATGGGGACTGCCCCTATTA ACCAAAGGACGCCCAATCATGGCATCTATGACTTGTCTGGAACTGGAAGGTCAATTCAACCTCACAGAGCTGCTTCATTAAGCCGGTTCAGGGAGAAGAG AAAAGAGCGGTGCTTTGACAAGAAAATTCGTTACACTGTGCGGAAGGAAGTTGCTCTCAGGATGCAGCGTAAGAAGGGTCAGTTTACTTCATCCAAGGCT AATTCTGATGAAGGGGGCTCGGCTTCATCTGGCTGCAGTGGAATGCAGGGTTCTGGACAAGATGAGAGCATGCTGGAAACTTTATGTACTCATTGCGGAA TCAGCTCAAAGTCCACTCCAATGATGCGTCGTGGTCCAAGTGGTCCAAGAACTCTTTGTAATGCATGTGGACTCAAGTGGGCCAACAAGGGTGTTTTAAG AAACATTTCAAAGCTTCCAATCATGAGTATTCAGCAATCTTCTATGAAGACAGTTGCACAGGTTAATGGTGAAGCTAACAATTCTGATACCATAACTGCG GCTGCAGACACAGTCTCGCCTAATGGTGATAACTCCACTTTGGCTACTGAAACATGA
AA sequence Show only first row Show all	>Potri.007G116550.1 pacid=42766426 polypeptide=Potri.007G116550.1.p locus=Potri.007G116550 ID=Potri.007G116550.1.v4.1 annot-version=v4.1 MPNSNGQAAAAVPVQMNHIEAQLVDEEDGDNNNIAGGGEESIDNTNSIQFEDGGCSGVVGEAVAASDMYVGTNGGGGADYGLVTANNDQLTLSFQGEVYV FDAVAPDKVQAVLLLLGGYEIPSGIPAMGTAPINQRTPNHGIYDLSGTGRSIQPHRAASLSRFREKRKERCFDKKIRYTVRKEVALRMQRKKGQFTSSKA NSDEGGSASSGCSGMQGSGQDESMLETLCTHCGISSKSTPMMRRGPSGPRTLCNACGLKWANKGVLRNISKLPIMSIQQSSMKTVAQVNGEANNSDTITA AADTVSPNGDNSTLATET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116550 [exp]	0	1
AT4G03260			Outer arm dynein light chain 1...		Potri.019G119300 [exp]	10.24	0.8823
AT4G08920		OOP2, HY4, BLU1...	OUT OF PHASE 2, ELONGATED HYPO...		Potri.002G096900 [exp]	10.48	0.8585	CRY1.2
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.017G150500 [exp]	15.68	0.8838
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.017G151600 [exp]	18.49	0.8831
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.006G135800 [exp]	20.39	0.8353
AT1G07510		FTSH10	FTSH protease 10 (.1)		Potri.009G033600 [exp]	23.23	0.8351
AT1G79900		ATMBAC2, BAC2	RABIDOPSIS MITOCHONDRIAL BASIC...		Potri.001G182000 [exp]	24.14	0.8480
AT1G70100			unknown protein		Potri.010G038100 [exp]	33.27	0.8507
AT4G22340		CDS2	cytidinediphosphate diacylglyc...		Potri.004G001200 [exp]	34.20	0.8416
AT2G30950		FTSH2, VAR2	VARIEGATED 2, FtsH extracellul...		Potri.014G139500 [exp]	41.85	0.8809	Pt-VAR2.3

Compare expression of checked genes

Potri.007G116550 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.