Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21175 154 / 5e-44 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT1G51600 142 / 1e-39 GATA GATA28, TIFY2A, ZML2 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) AT4G24470 129 / 3e-34 GATA GATA25, TIFY1, ZIM Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) AT3G24050 52 / 3e-07 GATA GATA1 GATA transcription factor 1 (.1) AT4G34680 48 / 4e-06 GATA GATA3 GATA transcription factor 3 (.1.2) AT3G54810 47 / 1e-05 GATA GATA8, BME3, BME3-ZF GATA TRANSCRIPTION FACTOR 8, BLUE MICROPYLAR END 3-ZINC FINGER, BLUE MICROPYLAR END 3, Plant-specific GATA-type zinc finger transcription factor family protein (.1.2) AT4G17570 47 / 2e-05 GATA GATA26 GATA transcription factor 26 (.1.2.3) AT4G32890 46 / 2e-05 GATA GATA9 GATA transcription factor 9 (.1) AT3G60530 45 / 3e-05 GATA GATA4 GATA transcription factor 4 (.1) AT2G45050 45 / 3e-05 GATA GATA2 GATA transcription factor 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G042200 [exp] 572 / 0 AT3G21175 171 / 1e-50 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.002G110800 [exp] 234 / 4e-74 AT3G21175 230 / 1e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.005G152500 [exp] 226 / 8e-71 AT3G21175 208 / 4e-65 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.010G251600 [exp] 149 / 5e-42 AT1G51600 298 / 9e-101 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.005G152800 [exp] 141 / 5e-39 AT4G24470 264 / 1e-87 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.002G110900 [exp] 140 / 1e-38 AT4G24470 253 / 2e-83 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.007G116550 [exp] 135 / 2e-36 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042300 [exp] 73 / 6e-16 AT1G51600 71 / 9e-16 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.005G066100 [exp] 50 / 7e-07 AT4G36240 114 / 1e-30 GATA transcription factor 7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028166 [exp] 208 / 1e-61 AT4G24470 233 / 4e-72 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10002412 [exp] 140 / 1e-38 AT4G24470 231 / 6e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10032839 [exp] 138 / 8e-38 AT4G24470 231 / 8e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10042865 [exp] 92 / 1e-20 AT4G24470 131 / 6e-36 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10028178 [exp] 50 / 9e-07 AT2G45050 204 / 3e-65 GATA transcription factor 2 (.1) Lus10041313 [exp] 49 / 2e-06 AT1G08010 163 / 2e-48 GATA transcription factor 11 (.1.2) Lus10042879 [exp] 49 / 2e-06 AT2G45050 147 / 1e-43 GATA transcription factor 2 (.1) Lus10025829 [exp] 49 / 3e-06 AT4G32890 221 / 2e-70 GATA transcription factor 9 (.1) Lus10037398 [exp] 49 / 3e-06 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2) Lus10016092 [exp] 49 / 4e-06 AT1G08010 159 / 2e-47 GATA transcription factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger CL0167 [poplar] [flax] PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.007G116700.1 pacid=42765817 polypeptide=Potri.007G116700.1.p locus=Potri.007G116700 ID=Potri.007G116700.1.v4.1 annot-version=v4.1 ATGGTAAAGAAAATGGAGATGGTGAATCATCAAAGGCAAAAGAGAGTAAGGAAGGGTAGGGATTATCATAATCGAAGAGTGATGCAGATCGAGGGTGGTG ATTTTGATTATGGATATGGTTTTGATGATGGGATGATGGAGATGATTAATGGAGTAGGAGTAGAAGAAGAAGTGGGGCAATTTAGTGCTAACAACAATAT TAATGGTGTTGTTATTAGTAATGGGAATGATGGCGTGTTTGAATCAACAAGAACAAGTGAGCTTACCATTGCTTTCGAAGGAGAAGTCTATGTTTTCCCC GCTGTTACTCCTTCTAAAGTGCAAGCAGTGTTGTTTCTTTTGGGAGAACCTGAGACATCCACTATTGTGCCAAGCTCGGAATATCTGCTTCAACAGAATG CCAGGAATGCAGGTGATGCCTCACAGGGCTTGAAACATTCACGAAGAGTTGCCTCCCTGGTAAGGTTCCGTGAAAAGCGGAAGGAGAGATGCTTTGAAAA GAAAGTTCGGTATACCTGCCGGAAAGAGGTTGCTCAGAAGATGCATCGTAAGAGAGGACAGTTTGCGTCATTGAACAATTGTTATGGCACAGATACTGGC AACTGGGAACCAAGCAATGGCATGCGTAATCCTGAATTTGATTTGCTTAGATGTCAACACTGTGGCATTAGTGCAAAGGATACTCCAGCAATGCGCCGGG GACCAGCTGGTCCAAGAACTCTATGTAATGCTTGTGGCCTTATGTGGGCAAATAAGGGAACTCTGAGAGATCTTAACAAAGGAGGGCGACAAATTTCCTT CAATCAAAATGAACCGGTAACTCCTGATTTTAAGCCTTCAACCATAGAACGAGAAAATCCTTTTGCCAACCCTGATGAAGCGGAGAGCCAAGAAGAGAGT AAGCCTGTGCCATTAGATTCTGAAAACTCTCTGAGGCCAAATGAACAGGATTTGCTAGAAACTGATGAGACTGCTCCTGATCCCTTGCCCATGCGCGTGG AAAATTCATCAATGAACCTTGATGATGAGGACTTTGAGAACACTTTGGATGAGCTTGGTGACGTTTCAGGTTCAGAATTTGAAATCCCGGAGCATTTTGA TGATCAGGTTGACATTGAGGATTCCAGTACAGGGACCGAGTGGCCTGGAACCTAA
AA sequence Show only first row Show all	>Potri.007G116700.1 pacid=42765817 polypeptide=Potri.007G116700.1.p locus=Potri.007G116700 ID=Potri.007G116700.1.v4.1 annot-version=v4.1 MVKKMEMVNHQRQKRVRKGRDYHNRRVMQIEGGDFDYGYGFDDGMMEMINGVGVEEEVGQFSANNNINGVVISNGNDGVFESTRTSELTIAFEGEVYVFP AVTPSKVQAVLFLLGEPETSTIVPSSEYLLQQNARNAGDASQGLKHSRRVASLVRFREKRKERCFEKKVRYTCRKEVAQKMHRKRGQFASLNNCYGTDTG NWEPSNGMRNPEFDLLRCQHCGISAKDTPAMRRGPAGPRTLCNACGLMWANKGTLRDLNKGGRQISFNQNEPVTPDFKPSTIERENPFANPDEAESQEES KPVPLDSENSLRPNEQDLLETDETAPDPLPMRVENSSMNLDDEDFENTLDELGDVSGSEFEIPEHFDDQVDIEDSSTGTEWPGT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.007G116700 [exp]	0	1
AT1G33490			unknown protein		Potri.003G048300 [exp]	2.23	0.6911
AT1G69010	bHLH	bHLH102, BIM2	BES1-interacting Myc-like prot...		Potri.004G112900 [exp]	11.40	0.6782
AT3G16210			F-box family protein (.1)		Potri.012G099733 [exp]	24.79	0.6774
					Potri.008G113800 [exp]	27.34	0.6585
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Potri.008G196500 [exp]	41.53	0.6042	CLA1.1
AT1G15230			unknown protein		Potri.003G053500 [exp]	43.95	0.6496
AT1G04850			ubiquitin-associated (UBA)/TS-...		Potri.017G056900 [exp]	48.76	0.5968
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.011G132400 [exp]	63.52	0.6192
AT1G32810			RING/FYVE/PHD zinc finger supe...		Potri.011G152600 [exp]	70.57	0.6147
ATCG00540		ATCG00540.1, PE...	photosynthetic electron transf...		Potri.016G094201 [exp]	82.09	0.6078

Compare expression of checked genes

Potri.007G116700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.