Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38040 385 / 3e-132 Exostosin family protein (.1) AT4G16745 212 / 2e-63 Exostosin family protein (.1.2) AT5G25820 193 / 2e-55 Exostosin family protein (.1) AT4G32790 191 / 6e-55 Exostosin family protein (.1) AT5G11610 186 / 1e-53 Exostosin family protein (.1.2) AT5G11130 181 / 4e-52 Exostosin family protein (.1) AT5G03795 179 / 3e-51 Exostosin family protein (.1) AT5G20260 175 / 3e-50 Exostosin family protein (.1) AT3G07620 175 / 4e-50 Exostosin family protein (.1) AT5G19670 176 / 2e-49 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G117600 [exp] 451 / 6e-159 AT4G38040 341 / 5e-115 Exostosin family protein (.1) Potri.005G147500 [exp] 390 / 3e-134 AT4G38040 653 / 0.0 Exostosin family protein (.1) Potri.007G058400 [exp] 387 / 6e-133 AT4G38040 649 / 0.0 Exostosin family protein (.1) Potri.015G087900 [exp] 290 / 5e-95 AT4G38040 352 / 8e-119 Exostosin family protein (.1) Potri.007G116800 [exp] 280 / 6e-91 AT4G38040 333 / 4e-111 Exostosin family protein (.1) Potri.019G036500 [exp] 244 / 1e-76 AT4G38040 275 / 9e-88 Exostosin family protein (.1) Potri.001G072500 [exp] 216 / 1e-65 AT4G38040 232 / 2e-71 Exostosin family protein (.1) Potri.003G079000 [exp] 207 / 1e-61 AT4G16745 636 / 0.0 Exostosin family protein (.1.2) Potri.006G118000 [exp] 194 / 5e-57 AT5G03795 608 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002664 [exp] 387 / 7e-133 AT4G38040 677 / 0.0 Exostosin family protein (.1) Lus10012723 [exp] 387 / 1e-132 AT4G38040 674 / 0.0 Exostosin family protein (.1) Lus10023927 [exp] 198 / 4e-58 AT5G25820 561 / 0.0 Exostosin family protein (.1) Lus10039142 [exp] 194 / 2e-56 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10043239 [exp] 192 / 3e-55 AT5G19670 748 / 0.0 Exostosin family protein (.1) Lus10011121 [exp] 187 / 5e-55 AT5G19670 730 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 190 / 6e-55 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10000608 [exp] 191 / 1e-54 AT4G32790 630 / 0.0 Exostosin family protein (.1) Lus10002799 [exp] 190 / 2e-54 AT5G25820 627 / 0.0 Exostosin family protein (.1) Lus10008751 [exp] 188 / 3e-54 AT3G07620 542 / 0.0 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.007G117800.1 pacid=42766077 polypeptide=Potri.007G117800.1.p locus=Potri.007G117800 ID=Potri.007G117800.1.v4.1 annot-version=v4.1 ATGAACAATCTTCAACGAGGACTTTCCTGTTTTTTGGTCGTTCTTTCAATCTGCTTCTCAATATATCACCCTCAATCCCCAAATTCTTTTCAGGTGCTGG CGCGGTCATTGAAAGAAAATGCTACAGATCCAGAAATCTTTTCTGAACTCTTCCATATTCCTGACTCTTTCAAAAAGGATTATAAGGAAATGGAGAAGAA CTTCAAGATCTTTGTGTATCCCCATAACACAGACAAGCATACTACTGCCTGTAATAAGCCAACGGAGCTTGGCTGTTTTAGGAGTGAAGGATACTTCTAT CACAATCTCAATCACAGTCGGTTCTTGACCAAAGATCCTGAAAAGGCTCACCTTTTCTTCATTCCCATTTATTGTCATTCGATGTCTCCTGAGGAAAAAT CCAAGAAAGAAAGGGCTATTGCTGTCCAGGATTTTGTCAAGTTCCTCATTTCCAAGTACCCTTATTGGAACCGAACTTTAGGTGCCGATCACTTCTTTGT AAGCTGCTCAGAAGTTGATGTGGCTGCTACCGCACGAATTGCTGACCGTTTGAAGAACTCAATTGGACTCATGTGTTCTCCTAGTTATAATAGTAAATAT GTTCCTCATAAGGATGTTTCCCTCCCACAAAGTGTACAGCCATATGCTTATACTGAAGCCAGAAATATAGAAAAGAACAGGACTATGCTGGGTTTCTGGA GTGGTGTTGAAGATTCTTATATAAGAGAGCGGCTGTACCTCACCTGGGAGTATGACTCAGAACTTTACATCGAAGCCAGAGATTGGCCTACTAGTATTGA ACAAGGACATTGGCAAGCCCGTGAGGATTTCTACAATTCTAAGTTTTGCATCTGTCCTGGAGGCCCTCAGCTTGATGGTTTTATAGCATTCGCAATTCAC TATGGATGCATTCCAGTTATCTTATCTGACTACTATGATTTACCATTCAACGACATTCTTGATTGGAGGAAATTTTCTGTAATACTAAAGGAGAATGATG TCTATTCGCTAAAGAAAATCCTTCAGGACATACCAAAGCAAACATATGAATCTCTGCAGAATCACACATTCATGGTCCAGAAGCACTTTCAGTGGAACTT ATCTCCAGTAAAATATGATGCATTTCATATGGTCATGTATGACCTGTGGCTGCGCCACCATGTTACCAAGTACCGGTACTAG
AA sequence Show only first row Show all	>Potri.007G117800.1 pacid=42766077 polypeptide=Potri.007G117800.1.p locus=Potri.007G117800 ID=Potri.007G117800.1.v4.1 annot-version=v4.1 MNNLQRGLSCFLVVLSICFSIYHPQSPNSFQVLARSLKENATDPEIFSELFHIPDSFKKDYKEMEKNFKIFVYPHNTDKHTTACNKPTELGCFRSEGYFY HNLNHSRFLTKDPEKAHLFFIPIYCHSMSPEEKSKKERAIAVQDFVKFLISKYPYWNRTLGADHFFVSCSEVDVAATARIADRLKNSIGLMCSPSYNSKY VPHKDVSLPQSVQPYAYTEARNIEKNRTMLGFWSGVEDSYIRERLYLTWEYDSELYIEARDWPTSIEQGHWQAREDFYNSKFCICPGGPQLDGFIAFAIH YGCIPVILSDYYDLPFNDILDWRKFSVILKENDVYSLKKILQDIPKQTYESLQNHTFMVQKHFQWNLSPVKYDAFHMVMYDLWLRHHVTKYRY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38040			Exostosin family protein (.1)		Potri.007G117800 [exp]	0	1
AT3G62230		DAF1	DUO1-activated F-box 1, F-box ...		Potri.001G420500 [exp]	4.58	0.7515
					Potri.011G143050 [exp]	4.69	0.7592
					Potri.016G130950 [exp]	11.48	0.6674
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.004G017800 [exp]	12.80	0.7396
AT2G04050			MATE efflux family protein (.1...		Potri.004G094650 [exp]	15.00	0.7053
AT5G63860		UVR8	UVB-RESISTANCE 8, Regulator of...		Potri.005G068801 [exp]	17.94	0.6575
AT5G52160			Bifunctional inhibitor/lipid-t...		Potri.015G139100 [exp]	38.49	0.6976
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.008G164100 [exp]	47.74	0.6879
					Potri.015G084300 [exp]	48.40	0.6738
					Potri.016G032783 [exp]	48.47	0.6005

Compare expression of checked genes

Potri.007G117800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.