Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G40830 79 / 4e-17 RHC1A RING-H2 finger C1A (.1.2.3) AT3G19950 77 / 1e-16 RING/U-box superfamily protein (.1) AT1G18770 72 / 2e-16 RING/U-box superfamily protein (.1) AT1G60360 76 / 3e-16 RING/U-box superfamily protein (.1) AT3G13228 76 / 4e-16 RING/U-box superfamily protein (.1) AT3G46620 76 / 4e-16 zinc finger (C3HC4-type RING finger) family protein (.1) AT2G29840 75 / 5e-16 RING/U-box superfamily protein (.1) AT3G56580 75 / 1e-15 RING/U-box superfamily protein (.1.2.3) AT5G08139 74 / 3e-15 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G107000 [exp] 399 / 5e-143 AT1G18760 79 / 7e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.005G062400 [exp] 199 / 3e-64 AT1G60360 82 / 3e-18 RING/U-box superfamily protein (.1) Potri.002G083001 [exp] 111 / 3e-30 AT1G18760 81 / 1e-18 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.007G106600 [exp] 94 / 3e-24 ND / Potri.001G103900 [exp] 92 / 1e-22 AT4G26400 85 / 2e-19 RING/U-box superfamily protein (.1.2) Potri.006G219000 [exp] 91 / 1e-21 AT5G08139 75 / 7e-15 RING/U-box superfamily protein (.1) Potri.001G322600 [exp] 81 / 2e-18 AT5G08139 71 / 5e-14 RING/U-box superfamily protein (.1) Potri.001G185200 [exp] 79 / 9e-18 AT3G02340 66 / 2e-12 RING/U-box superfamily protein (.1) Potri.006G032100 [exp] 78 / 7e-17 AT2G40830 327 / 1e-111 RING-H2 finger C1A (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018167 [exp] 96 / 5e-24 AT3G19950 75 / 1e-15 RING/U-box superfamily protein (.1) Lus10025671 [exp] 92 / 2e-22 AT3G13228 74 / 4e-15 RING/U-box superfamily protein (.1) Lus10013235 [exp] 81 / 6e-18 AT2G40830 334 / 7e-115 RING-H2 finger C1A (.1.2.3) Lus10030755 [exp] 79 / 2e-17 AT2G40830 336 / 2e-115 RING-H2 finger C1A (.1.2.3) Lus10010179 [exp] 79 / 3e-17 AT3G19950 285 / 6e-96 RING/U-box superfamily protein (.1) Lus10022967 [exp] 76 / 5e-16 AT1G60360 153 / 3e-45 RING/U-box superfamily protein (.1) Lus10031422 [exp] 74 / 2e-15 AT5G64920 210 / 5e-66 COP1-interacting protein 8 (.1) Lus10001582 [exp] 72 / 2e-15 AT2G40830 178 / 2e-55 RING-H2 finger C1A (.1.2.3) Lus10011392 [exp] 72 / 4e-15 AT5G59550 75 / 2e-15 zinc finger (C3HC4-type RING finger) family protein (.1) Lus10003698 [exp] 72 / 1e-14 AT2G40830 263 / 5e-87 RING-H2 finger C1A (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.007G118000.1 pacid=42766719 polypeptide=Potri.007G118000.1.p locus=Potri.007G118000 ID=Potri.007G118000.1.v4.1 annot-version=v4.1 ATGGAGACTCCCATCGATTACGACTTTATTGTCAGATTAAAACCCAACACAATTAGAAACTCACAACACGTCAATGTTGACCAACTACCAACAACATTCC CTGTGAACTTCTTGCTTTACAAGCGAGAGATCTACTCTCTTCATGGAGTGTATAGAAGACCCGTGGCCATAAGCCGCAAAATTATTCACATTCCGGTTGG AGATTCACCGAGTCATTACATTAATGATTTCAAAGAGATCTTGACCGACATGGGCATCCCTGAGATCAAGAGATCACAGATACTATTCGAAATTACAACC AAGGCGCATGGCATTGATACTTCTAACGGCGTGTTCATGTTTGTCTCAATACGGAAGACAGTCTATCAAGAAGCTAGACTTCGTAATGAAGAAGATGATA TTGCTAGAGCTGAGAGGGAGTCAATGGAGGTTGAGGCAAAGCCAATCCCGGCCACCAAGTCTTCTATTGATGCATTGGAAAGGGTGGTTTTGGACGCCTC GGCGTCAGCGAGAGACTGCACTGTTTGTATGGAAGAGATTGATGCAGGGAGTGAAGCCATTCGGATGCCGTGCTCGCATGTCTATCACTCAGATTGCATT GTTAAGTGGTTGCAAACTAGTCACATGTGTCCTCTTTGCCGCTATCATATGCCCTGTGAAAACTTGTGA
AA sequence Show only first row Show all	>Potri.007G118000.1 pacid=42766719 polypeptide=Potri.007G118000.1.p locus=Potri.007G118000 ID=Potri.007G118000.1.v4.1 annot-version=v4.1 METPIDYDFIVRLKPNTIRNSQHVNVDQLPTTFPVNFLLYKREIYSLHGVYRRPVAISRKIIHIPVGDSPSHYINDFKEILTDMGIPEIKRSQILFEITT KAHGIDTSNGVFMFVSIRKTVYQEARLRNEEDDIARAERESMEVEAKPIPATKSSIDALERVVLDASASARDCTVCMEEIDAGSEAIRMPCSHVYHSDCI VKWLQTSHMCPLCRYHMPCENL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G18760			Zinc finger, C3HC4 type (RING ...		Potri.007G118000 [exp]	0	1
AT5G03980			SGNH hydrolase-type esterase s...		Potri.005G024933 [exp]	15.87	0.6218
					Potri.004G185850 [exp]	23.49	0.6451
AT1G11660			heat shock protein 70 (Hsp 70)...		Potri.011G139100 [exp]	48.85	0.6385
					Potri.001G422000 [exp]	55.37	0.6363
					Potri.014G189201 [exp]	138.03	0.5794
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Potri.001G264600 [exp]	152.08	0.5803
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.012G109100 [exp]	155.53	0.5901
AT1G04020		ROW1, ATBARD1, ...	breast cancer associated RING ...		Potri.002G259000 [exp]	192.93	0.5673
AT1G55570		SKS12	SKU5 similar 12 (.1)		Potri.001G000600 [exp]	227.74	0.5241

Compare expression of checked genes

Potri.007G118000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.