Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G33650 1068 / 0 APEM1, DRP3A, ADL2 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) AT2G14120 1033 / 0 DRP3B dynamin related protein (.1.2.3) AT5G42080 286 / 8e-86 RSW9, DRP1A, AG68, ADL1A, ADL1 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) AT1G14830 281 / 5e-84 DRP1C, ADL5, ADL1C DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1) AT3G61760 279 / 2e-83 ADL1B DYNAMIN-like 1B (.1) AT3G60190 278 / 7e-83 ADL1E, ADL4, ADLP2, EDR3, DRP1E ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) AT2G44590 275 / 7e-82 ADL1D DYNAMIN-like 1D (.1.2.3) AT1G60500 144 / 1e-35 DRP4C Dynamin related protein 4C (.1) AT1G60530 119 / 3e-29 DRP4A Dynamin related protein 4A (.1) AT1G10290 69 / 7e-12 DRP2A, ADL6 DYNAMIN-RELATED PROTEIN 2A, dynamin-like protein 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041800 [exp] 1426 / 0 AT4G33650 1070 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Potri.012G125300 [exp] 439 / 8e-149 AT2G14120 365 / 3e-121 dynamin related protein (.1.2.3) Potri.003G141000 [exp] 294 / 5e-89 AT5G42080 1115 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.002G171200 [exp] 291 / 4e-88 AT3G61760 1090 / 0.0 DYNAMIN-like 1B (.1) Potri.001G090600 [exp] 291 / 5e-88 AT5G42080 1123 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Potri.001G147500 [exp] 279 / 2e-83 AT3G60190 976 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.014G043600 [exp] 278 / 8e-83 AT3G60190 1042 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.002G135100 [exp] 274 / 2e-81 AT3G60190 1027 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Potri.010G105900 [exp] 267 / 5e-79 AT1G14830 1100 / 0.0 DYNAMIN RELATED PROTEIN 1C, ARABIDOPSIS DYNAMIN-LIKE PROTEIN 5, DYNAMIN-like 1C (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014041 [exp] 1164 / 0 AT4G33650 1081 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027906 [exp] 1108 / 0 AT4G33650 1080 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10019875 [exp] 1097 / 0 AT4G33650 1030 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10002407 [exp] 1094 / 0 AT4G33650 1079 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10012076 [exp] 1056 / 0 AT4G33650 1045 / 0.0 ABERRANT PEROXISOME MORPHOLOGY 1, ARABIDOPSIS DYNAMIN-LIKE 2, dynamin-related protein 3A (.1.2) Lus10027905 [exp] 466 / 2e-148 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10023073 [exp] 290 / 4e-87 AT5G42080 1106 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10040117 [exp] 290 / 6e-86 AT3G60190 907 / 0.0 ENHANCED DISEASE RESISTANCE 3, DYNAMIN-RELATED PROTEIN 1E, DYNAMIN-LIKE PROTEIN 2, ARABIDOPSIS DYNAMIN-LIKE 4, DYNAMIN-like 1E (.1) Lus10003873 [exp] 280 / 1e-83 AT5G42080 1137 / 0.0 RADIAL SWELLING 9, DYNAMIN-RELATED PROTEIN 1A, dynamin-like protein (.1.2.3) Lus10004007 [exp] 278 / 5e-83 AT3G61760 1099 / 0.0 DYNAMIN-like 1B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00350 [poplar] [flax] Dynamin_N Dynamin family CL0023 [poplar] [flax] PF01031 [poplar] [flax] Dynamin_M Dynamin central region CL0023 [poplar] [flax] PF02212 [poplar] [flax] GED Dynamin GTPase effector domain
Representative CDS sequence Show only first row Show all	>Potri.007G118300.2 pacid=42766258 polypeptide=Potri.007G118300.2.p locus=Potri.007G118300 ID=Potri.007G118300.2.v4.1 annot-version=v4.1 ATGGCGGAGGAACCAGCATCACCGTCGCTATCATCGGCGGCGCCGCTAGGATCATCGGTGATACCGATAGTTAACAAGTTACAAGATATATTTGCTCAGT TAGGTAGTCAATCGACGATTGAGTTACCGCAAGTGGCAGTTGTAGGCAGTCAAAGCAGTGGTAAATCGAGTGTTTTAGAAGCACTTGTTGGGAGAGATTT CTTGCCACGTGGAAACGAGATTTGTACTCGGCGACCGCTGGTTTTGCAGTTATTGCAGACTAAAAGGAAAGGTGACGGTAGTGGTGAAGATGAGTGGGGA GAGTTTCTGCATTTGCCTGGGAAACGGTTTTATGACTTTTCCGAGATCCGGAGCGAAATTCAGGCTGAGACTGCTAAGGAAGCAGGAGGCAACAAAGGTG TCTCTGACAAGCAAATTCGTTTGAAGATTTTTTCACCAAATGTTCTTGATATTACACTTGTTGATCTACCTGGTATAACAAAGGTTCCTGTGGGTGATCA ACCCTCCGATATTGAAGCACGAATTAGAACTATGATCATGTCATATATTAAAAAACCAAGCTGTCTGATTCTAGCTGTTACAGCAGCAAATTCAGATTTA GCAAACTCAGATGCTCTTCAGATTGCAGGAAATGCAGATCCTGATGGTTATAGAACCATTGGAATAATCACGAAGTTGGACATTATGGACAGAGGCACTG ATGCTCGTAATCTTTTGCTTGGAAAAGTGATTCCCCTTAGACTTGGTTATGTTGGTGTTGTGAATCGTAGTCAAGAGGATATCATACTCAATCGGAGCAT CAAGGATGCACTTGCTGCGGAGGAGAAGTTCTTCCGTAGTCGTCCAGTATATAATGGTCTAGCTGATCGCTGTGGCGTTCCTCAGCTGGCGAAGAAGCTG AATCAGATTCTAGTGCAGCATATAAAATCAATACTTCCAGGGCTGAAATCACGCATAAGTTCTGCTTTGGTTTCTGTAGCAAAAGAACATGCAAGCTATG GAGAAATTACGGAATCAAAGGCTGGACAAGGAACTCTTATTCTGAACATTCTTTCAAAATATTCTGAAGCATTTTCTTCAATGATAGAGGGCAAAAATGA AGAAATGTCAACATCTGAGCTTGCCGGAGGAGCACGAATTCACTATATTTTTCAATCAATCTTTGTGAAGAGTTTAGAGGAGGTCGATCCTTGTGAGGAC TTGACTGATGGTGACATTCAAACTATCATTCAGAATGCCACTGGTCCTAGAACTCCACTGTTTGTACCAGAGGTGCCATTTGAAGTTCTAATCAGGAAGC AAATAGCTCGTTTATTAGATCCAAGCCTTCAGTGTGCCAGGTTTATATACAATGAATTAATAAAGATTAGCCATCACTGTCTAGTGAATGAACTTCAGCG GTTTCCTGTTCTAAGAAAGCGCATGGATGAAGTTATTGGAAACTTTTTGCGAGATGGTCTTGAACCATCAGAGACAATGATTGGACATATTATTGAAATG GAGATGGACTACATAAATACTTCCCACCCAAATTTTGTTGGTGGGAGTAAGGCTGTGGAGATTGCACAGCAGCAGATCAAGTCGTCAAAGGGTTCTCTTG CTATGCCCAGGCAAAAGTGTTGTCAAGAGGCACTGAGGCGCTCGCATAGGCACTCCAGGCGAGGTGAGGATGGCATAGAGCTTGAAAAGGCACCTGCTTC TGAAAGGAGTATGAAGACTCGTGGTATTCTGGCCAGACAAGTAAATGGGATCGTGCCTGATCAGGGAGTACGTCCGGTGGCAGAAGTTGAAAAGGTCCCA CCTGCTGGCAATACAAATGTTTCAAGTTGGGGTATCTCATCAATATTTGGTGGAGGTGATCATTCTCGAATGTATGCTAAAGAAAATTCAACAAGCAAGT CATACAACGAACCTGCTCAGAGCATAGAACCCTTGGAACAAAGCTTGTCTCTGATTCATTTAAGAGAGCCCCCAACTGTCTTGAGGCCTTCAGAAAACCA TTCAGAGCATGAGTCTATAGAAATTGCAGTCACAAAATTGCTGTTGAGATCATACTATGACATTGTTCGGAAAAATATTGAGGACTCCATACCAAAAGCA ATTATGCACTTTCTGGTAAACCATACAAAGCGTGAACTGCACAATGTCTTCATTAGAAAACTTTACAGGGAGAATTTGTTTGAGGAGATGTTGCAGGAAC CTGATGAGATAGCAATGAAGAGAAAGCAGACACGAGAACAACTTAGAGTTCTCCAACAGGCATTTAGGACATTGGATGAATTGCCATTGGAAGCTGAAAC TGTTGAAAGAGGATACAGTTTGAGCTCTGATTCCACAGGATTGCCAAAGATCCATGGACTGCCAACATCAACAATGTATAGCAGTGGTTCCAGTGATTCC TACACAGCTTCTCCTAAGAACCCGAAGTCCCGGAAGTCATCCCACTCAGGGGAGCTACAGCCACATCTATATGCTGATTCTAATGGAAGTGGACATGCTT ACATGCCAGGTCTCTATCCAACAGTAGACTTTTAA
AA sequence Show only first row Show all	>Potri.007G118300.2 pacid=42766258 polypeptide=Potri.007G118300.2.p locus=Potri.007G118300 ID=Potri.007G118300.2.v4.1 annot-version=v4.1 MAEEPASPSLSSAAPLGSSVIPIVNKLQDIFAQLGSQSTIELPQVAVVGSQSSGKSSVLEALVGRDFLPRGNEICTRRPLVLQLLQTKRKGDGSGEDEWG EFLHLPGKRFYDFSEIRSEIQAETAKEAGGNKGVSDKQIRLKIFSPNVLDITLVDLPGITKVPVGDQPSDIEARIRTMIMSYIKKPSCLILAVTAANSDL ANSDALQIAGNADPDGYRTIGIITKLDIMDRGTDARNLLLGKVIPLRLGYVGVVNRSQEDIILNRSIKDALAAEEKFFRSRPVYNGLADRCGVPQLAKKL NQILVQHIKSILPGLKSRISSALVSVAKEHASYGEITESKAGQGTLILNILSKYSEAFSSMIEGKNEEMSTSELAGGARIHYIFQSIFVKSLEEVDPCED LTDGDIQTIIQNATGPRTPLFVPEVPFEVLIRKQIARLLDPSLQCARFIYNELIKISHHCLVNELQRFPVLRKRMDEVIGNFLRDGLEPSETMIGHIIEM EMDYINTSHPNFVGGSKAVEIAQQQIKSSKGSLAMPRQKCCQEALRRSHRHSRRGEDGIELEKAPASERSMKTRGILARQVNGIVPDQGVRPVAEVEKVP PAGNTNVSSWGISSIFGGGDHSRMYAKENSTSKSYNEPAQSIEPLEQSLSLIHLREPPTVLRPSENHSEHESIEIAVTKLLLRSYYDIVRKNIEDSIPKA IMHFLVNHTKRELHNVFIRKLYRENLFEEMLQEPDEIAMKRKQTREQLRVLQQAFRTLDELPLEAETVERGYSLSSDSTGLPKIHGLPTSTMYSSGSSDS YTASPKNPKSRKSSHSGELQPHLYADSNGSGHAYMPGLYPTVDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G33650		APEM1, DRP3A, A...	ABERRANT PEROXISOME MORPHOLOGY...		Potri.007G118300 [exp]	0	1
AT3G63460		EMB2221	transducin family protein / WD...		Potri.009G055400 [exp]	3.74	0.8281
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	5.65	0.8288
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.001G096100 [exp]	9.48	0.7100
AT5G45160			Root hair defective 3 GTP-bind...		Potri.015G112700 [exp]	11.13	0.7216
AT5G54920			unknown protein		Potri.001G423200 [exp]	12.48	0.7405
AT4G28760			Protein of unknown function (D...		Potri.002G253600 [exp]	13.03	0.7843
AT2G34970			Trimeric LpxA-like enzyme (.1)		Potri.005G045200 [exp]	13.26	0.8194
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Potri.004G115800 [exp]	14.83	0.6722	HYP1.1
AT1G31730			Adaptin family protein (.1)		Potri.004G235200 [exp]	14.96	0.7709
AT4G38120			ARM repeat superfamily protein...		Potri.001G454200 [exp]	15.74	0.7853

Compare expression of checked genes

Potri.007G118300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.