Plant FIBer expression Database

Potri.007G118701 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G05800 109 / 4e-27 unknown protein
AT3G11290 89 / 9e-20 unknown protein
AT3G11310 69 / 6e-13 unknown protein
AT2G19220 54 / 5e-08 unknown protein
AT2G24960 53 / 1e-07 unknown protein
AT4G02210 52 / 2e-07 unknown protein
AT5G36080 40 / 0.0005 unknown protein
AT4G02550 40 / 0.0008 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G339400
[exp]
529 / 0 AT5G05800 107 / 6e-26 unknown protein
Potri.014G061450
[exp]
450 / 5e-161 AT5G05800 111 / 2e-27 unknown protein
Potri.001G391600
[exp]
433 / 9e-155 AT5G05800 79 / 2e-16 unknown protein
Potri.010G190650
[exp]
417 / 8e-148 AT5G05800 104 / 6e-25 unknown protein
Potri.006G116400
[exp]
392 / 8e-138 AT5G05800 97 / 3e-22 unknown protein
Potri.008G217500
[exp]
384 / 9e-135 AT5G05800 64 / 4e-11 unknown protein
Potri.008G209401
[exp]
377 / 2e-132 AT5G05800 99 / 3e-23 unknown protein
Potri.008G074066
[exp]
360 / 5e-125 AT5G05800 92 / 1e-20 unknown protein
Potri.014G026000
[exp]
313 / 9e-107 AT5G05800 100 / 2e-23 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025958
[exp]
71 / 6e-14 AT2G24960 102 / 4e-24 unknown protein
Lus10014257
[exp]
72 / 7e-14 AT3G14820 282 / 1e-89 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10016838
[exp]
61 / 5e-11 AT2G24960 71 / 4e-14 unknown protein
Lus10002039
[exp]
53 / 1e-07 AT3G11290 91 / 2e-20 unknown protein
Lus10024329
[exp]
52 / 2e-07 AT5G05800 81 / 7e-17 unknown protein
Lus10013421
[exp]
52 / 3e-07 AT4G02210 418 / 1e-144 unknown protein
Lus10010304
[exp]
50 / 9e-07 AT4G02210 395 / 1e-135 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0123 HTH PF12776 Myb_DNA-bind_3 Myb/SANT-like DNA-binding domain
Representative CDS sequence
>Potri.007G118701.1 pacid=42765065 polypeptide=Potri.007G118701.1.p locus=Potri.007G118701 ID=Potri.007G118701.1.v4.1 annot-version=v4.1
ATGGATGGGTCTGACACACATGACAAAGCTTCTTGGAGCAAGGCAATGTTGCACACGTTTTGCGACATTTGCATTACAGTTATTGAGAGAGGCATGAGAC
CAAACACACATTTTGATAAAGCTGGCTGGAAATTTGTCGTACAGTCGTTCAAAGATCAGACAGGCCTTTCATTATCAAAATCTCAGCTTAAAAACAAATG
GGATGGGATTAAAAAGGACTGGAGGGTATGGAAAAAATTAATAACTGAAACTGGAGTTGGTTGGTCTTCTGAACTTGGGACCATCTCAGCAACTGATGAA
TGGTGGCAATCAAAAATTCAGGAAATGAGAGGAGCAAAGAAGTTTAGGCATGTCGGCATAGAGCTCTCGTTGTGTGCCAAGTACGATATCATGTTTACTA
ACATAGTGGCCACGAGAGAATATGCTTGGACTCCCTCACAAGGACTTTTATCAGATGAAGATAATGTGGCGGCTGGAAGTGGCGACTCTGAAGATGATGC
AATCCCTGATTTCAGTCGGGATGTTAGCAACATGGTTGGTGGAAGCAATGTCGCAAACAGTAGCAGCAACCCCAACAGTTCAAAGAGAAAGAGTGCACAT
CAGACTACTCCTCAATTGCAAAAAAAGAAAAGGGGAACTGGAATGGGAGCAGTGCTAGTTGCACAGGGATCACAGCTCCTTGTAGAGATAAAAAAAGGTT
GTAGCATTGAAGAGGTAATTGAAGAACTGCACTCTATTGATGGAGTTGCCTTCGGTAGTGCACTGCATACCTTTGCAACTAAATTCTTCTGTGCGAGGAG
CAAGAGGGAGATGTGGGCTGCAATGGGTTGTATTGACAGAAAAATGTCATGGCTGAAAATAATGTTTGACCAACACAGACAAGCTTAG
AA sequence
>Potri.007G118701.1 pacid=42765065 polypeptide=Potri.007G118701.1.p locus=Potri.007G118701 ID=Potri.007G118701.1.v4.1 annot-version=v4.1
MDGSDTHDKASWSKAMLHTFCDICITVIERGMRPNTHFDKAGWKFVVQSFKDQTGLSLSKSQLKNKWDGIKKDWRVWKKLITETGVGWSSELGTISATDE
WWQSKIQEMRGAKKFRHVGIELSLCAKYDIMFTNIVATREYAWTPSQGLLSDEDNVAAGSGDSEDDAIPDFSRDVSNMVGGSNVANSSSNPNSSKRKSAH
QTTPQLQKKKRGTGMGAVLVAQGSQLLVEIKKGCSIEEVIEELHSIDGVAFGSALHTFATKFFCARSKREMWAAMGCIDRKMSWLKIMFDQHRQA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G05800 unknown protein Potri.007G118701
[exp]
0 1
Potri.013G071200
[exp]
1.00 0.9988
AT1G02090 ATCSN7, COP15, ... FUSCA 5, CONSTITUTIVE PHOTOMOR... Potri.003G081066
[exp]
2.44 0.9941
AT5G05800 unknown protein Potri.001G339400
[exp]
4.00 0.9951
Potri.006G128300
[exp]
5.29 0.9938
AT5G64330 JK218, RPT3, NP... ROOT PHOTOTROPISM 3, NON-PHOTO... Potri.001G255950
[exp]
7.93 0.9750
Potri.013G011550
[exp]
8.66 0.9713
AT2G28490 RmlC-like cupins superfamily p... Potri.001G259208
[exp]
9.79 0.9913
AT3G61230 LIM PLIM2c PLIM2c, GATA type zinc finger ... Potri.001G107100
[exp]
10.90 0.9842
AT3G22930 CML11 calmodulin-like 11 (.1) Potri.002G047300
[exp]
10.95 0.9833 Pt-ACCAL.7
AT5G05800 unknown protein Potri.001G391600
[exp]
12.40 0.9855

Potri.007G118701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.