Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22104 506 / 7e-176 Phototropic-responsive NPH3 family protein (.1) AT3G19850 283 / 1e-88 Phototropic-responsive NPH3 family protein (.1) AT1G50280 244 / 5e-74 Phototropic-responsive NPH3 family protein (.1) AT5G48800 223 / 3e-65 Phototropic-responsive NPH3 family protein (.1) AT3G08570 222 / 1e-64 Phototropic-responsive NPH3 family protein (.1) AT3G44820 220 / 7e-64 Phototropic-responsive NPH3 family protein (.1) AT5G66560 219 / 1e-63 Phototropic-responsive NPH3 family protein (.1) AT3G50840 216 / 7e-63 Phototropic-responsive NPH3 family protein (.1) AT1G30440 205 / 3e-58 Phototropic-responsive NPH3 family protein (.1) AT5G03250 197 / 8e-56 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041600 [exp] 957 / 0 AT3G22104 488 / 4e-169 Phototropic-responsive NPH3 family protein (.1) Potri.004G030600 [exp] 491 / 2e-169 AT3G22104 313 / 1e-100 Phototropic-responsive NPH3 family protein (.1) Potri.011G032100 [exp] 457 / 3e-156 AT3G22104 309 / 4e-99 Phototropic-responsive NPH3 family protein (.1) Potri.008G085500 [exp] 331 / 1e-106 AT3G19850 449 / 2e-152 Phototropic-responsive NPH3 family protein (.1) Potri.010G170900 [exp] 329 / 1e-105 AT3G19850 426 / 2e-143 Phototropic-responsive NPH3 family protein (.1) Potri.009G150500 [exp] 229 / 2e-67 AT3G44820 826 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.007G033900 [exp] 224 / 4e-65 AT5G66560 789 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.002G242300 [exp] 222 / 7e-65 AT5G48800 899 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.004G189800 [exp] 222 / 8e-65 AT3G44820 835 / 0.0 Phototropic-responsive NPH3 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039710 [exp] 617 / 0 AT3G22104 433 / 9e-148 Phototropic-responsive NPH3 family protein (.1) Lus10018499 [exp] 600 / 0 AT3G22104 420 / 2e-142 Phototropic-responsive NPH3 family protein (.1) Lus10034200 [exp] 249 / 2e-75 AT3G19850 390 / 1e-129 Phototropic-responsive NPH3 family protein (.1) Lus10012901 [exp] 241 / 2e-71 AT3G19850 415 / 3e-138 Phototropic-responsive NPH3 family protein (.1) Lus10030554 [exp] 234 / 5e-69 AT3G19850 414 / 5e-138 Phototropic-responsive NPH3 family protein (.1) Lus10037432 [exp] 224 / 3e-65 AT5G66560 747 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10025928 [exp] 222 / 9e-65 AT5G48800 925 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10041276 [exp] 223 / 1e-64 AT5G66560 750 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10019522 [exp] 221 / 3e-64 AT3G44820 781 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 207 / 4e-59 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.007G118800.1 pacid=42766461 polypeptide=Potri.007G118800.1.p locus=Potri.007G118800 ID=Potri.007G118800.1.v4.1 annot-version=v4.1 ATGGCAGTTTGCTGTGATCTTGAAGTAGATGTCAATGGTGAAGAGACGTTCATGGTGGATAAGAAGGTCATTGCTTCATATTGTGGCAGATTAAGAAAAT TATTTGGTAAATCAACAGGTAGTGCAAGAAATTTGAAAGTGATATTCAATGACTTTCCTGGTGGGGCTGGAAATTTTGAACTCCTGTCAAGATTCTGCTA CAATAACGGTAGGATTGACATAACTCCTTCAAATATTTCCTTCCTACATTCTGCTGCACAGTTCATGGAGATGAACAATTCTGTATCTGGAACTCATAAC TTATTGGAAGAGACAGAGAAATCACTTAAAGGGATGAATTACTGGGCATGGTCTGAGCTATTAATCACTATAAAGCAGTGCCAAGATTTACTTCCGTTTC CAAATTCTTCTGGTATTCTTGAAAAATGTGTGGATTCTCTTATTGGAAGGATGGCTACTTCTAGTGAGCCTAGTCCATGTCCATCTACTTCTTCTCCTGA TAGCTCTGGAGTCCGGTTTTCATGTGACACTAGAAGCACTGAGAGTTTGAAGAATAGCTTCTCTCGAGCAACCTGGTGGTTTGAGGATCTTTTGGTTTTG AGCACTAATTTGGTTGGAATGGTGATCAAATCCATGGTCTTGCGGAAGTTTGATCATGCTATCATTAGTAGGTTTCTCTTTTATTACCAGAAATCGAAGT GCTATACTGGCACGTCTGATGAGAAGCGTAATGTAGTAGAAACTGTCATAGATATACTTTATATTCTTGATTGGAACTCTGTTTCATTCAAGAGTTTATT TGGAATTCTTCGAGTTGCTTTGAATTTGAACATAAGCAAATGTAGCAGGACCAAGTTGGAGAGTATGATAGGTTCTCAGATGGATCAAGCAACTCTAGAT AATCTGCTTATTCCTTCTCCATATGGGATGAATTACTTGTATAACGTGAAGCTTGTTCTAAGGTTCTTGAAAGCATTTCTGCACGGAGGAATCAGTCAAA CGTCTCCAACACAATTGAGAAAAGTTGCTAGTTTGATGGACTTGTATATAGCAGAAGTAGCCCCAGATCCTTGTCTAAAGCCTTCTAAGTTCTTGGCCCT AACCATGTCTCTGCCAGATTCTGCCAGAGATTCATATGACAGAATCTACCGTGCCACAGACATGTATCTACAGGTGCATACTGGATTATCAGAAGAAGAA AAGATGAAGATATGCTGTGCATTGAATTATGAGAAGCTCTCAGCTGAAGCTTGCATCCACCTTTCTCAGAACAAAAGGTTTCCATCAAAAAGTGCAGTCC AAGCTCTCATGTCTCAGCAAGTCAAGCTCAAAAGCTTACTCAAAGCCACCGACAAAATGAAATGCTATATTGATTCACCTTCTGGTGTTAGTGAGATTGG AAGGAAGGGAAAGAAAAATGAAGCCAGTGAACAAATTGTGCTCTATGCTGGTAAACTTGATCCTCCAACTAACAATGAGAAGCTTAGAGCCCATTTGCAA GGAATGCAATGGAGGGTGACGGAATTGGAGAAAATTTGCTTGAAAATGCAAACACAGATGACAAAAATCATAAAGTCAAGAGTATCAAGCCATAGCACTC CCAGATCCTTACCCAAGCTTTGTTCATGA
AA sequence Show only first row Show all	>Potri.007G118800.1 pacid=42766461 polypeptide=Potri.007G118800.1.p locus=Potri.007G118800 ID=Potri.007G118800.1.v4.1 annot-version=v4.1 MAVCCDLEVDVNGEETFMVDKKVIASYCGRLRKLFGKSTGSARNLKVIFNDFPGGAGNFELLSRFCYNNGRIDITPSNISFLHSAAQFMEMNNSVSGTHN LLEETEKSLKGMNYWAWSELLITIKQCQDLLPFPNSSGILEKCVDSLIGRMATSSEPSPCPSTSSPDSSGVRFSCDTRSTESLKNSFSRATWWFEDLLVL STNLVGMVIKSMVLRKFDHAIISRFLFYYQKSKCYTGTSDEKRNVVETVIDILYILDWNSVSFKSLFGILRVALNLNISKCSRTKLESMIGSQMDQATLD NLLIPSPYGMNYLYNVKLVLRFLKAFLHGGISQTSPTQLRKVASLMDLYIAEVAPDPCLKPSKFLALTMSLPDSARDSYDRIYRATDMYLQVHTGLSEEE KMKICCALNYEKLSAEACIHLSQNKRFPSKSAVQALMSQQVKLKSLLKATDKMKCYIDSPSGVSEIGRKGKKNEASEQIVLYAGKLDPPTNNEKLRAHLQ GMQWRVTELEKICLKMQTQMTKIIKSRVSSHSTPRSLPKLCS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.007G118800 [exp]	0	1
AT5G50350			unknown protein		Potri.015G091500 [exp]	1.00	0.9063
AT4G13310		CYP71A20	"cytochrome P450, family 71, s...		Potri.003G192300 [exp]	2.82	0.8724
AT5G39660	DOF	CDF2, AtDof5. 2	cycling DOF factor 2 (.1.2)		Potri.017G084600 [exp]	3.46	0.8434
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.002G106400 [exp]	4.00	0.8341
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.001G369100 [exp]	6.00	0.8546	ATCSLE1.1
AT1G31690			Copper amine oxidase family pr...		Potri.008G151900 [exp]	7.34	0.8488	DAO.3
AT3G60340			alpha/beta-Hydrolases superfam...		Potri.002G137200 [exp]	8.00	0.8597
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.008G081500 [exp]	8.24	0.8323
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004100 [exp]	8.30	0.8672
AT5G21482		ATCKX5, CKX7	ARABIDOPSIS THALIANA CYTOKININ...		Potri.006G221000 [exp]	12.00	0.8026

Compare expression of checked genes

Potri.007G118800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.