Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11480 145 / 5e-37 eukaryotic translation initiation factor-related (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041300 [exp] 842 / 0 AT1G11480 263 / 3e-80 eukaryotic translation initiation factor-related (.1.2) Potri.011G031900 [exp] 299 / 4e-93 AT1G11480 318 / 9e-101 eukaryotic translation initiation factor-related (.1.2) Potri.009G130200 [exp] 52 / 9e-07 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2) Potri.004G169100 [exp] 45 / 0.0002 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039708 [exp] 495 / 2e-169 AT1G11480 237 / 3e-70 eukaryotic translation initiation factor-related (.1.2) Lus10018497 [exp] 487 / 4e-166 AT1G11480 242 / 5e-72 eukaryotic translation initiation factor-related (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G119200.1 pacid=42765989 polypeptide=Potri.007G119200.1.p locus=Potri.007G119200 ID=Potri.007G119200.1.v4.1 annot-version=v4.1 ATGTCGAAGAAGAAAACGGCGTCGACCATGTCGTTGAAGGACTTTCATGGCGGCTCTATTCCTTCTGATCTCCCTCTACCTTCAGCTCCTGGCGTTATGA TGAAGCCTGGTTCGGACCGAAATGCGTCGGCAAATTGGGGAAATAATTTGATGCGGCCGAAGTCGTCAGGAGCTGCTCGTGGTTTTGATGAGAAAGCTTC GTTTTTATCTCACCAGGCGCCTATAGGTAGAAACTTTGATGAGGATGAGCGTAAGCCGTTAGATGGTTCATCTGCTCCTCGTCGTACTATTAGTGATGAA AATGTTCGTGCTTCGGCTTTGGTTCCTCAAGAGTTGAAGCCGGAGTATGTTTCTGGTTCGTCTGTTAGGGTGCCGGATAGACCGGTGACAAGTCCGGTAC CACAGTCTATGAGTTTGGGAGCGAGTTTGTCTCCGTTGAGACCGGGAGGGGGTTCGGTTGTAGTTAGTTCGCAGAATTCGGGTGGTTGGGGGGGTAATTC AGCGATAACAAGTGGTGGTAATGGTCAGGGTGTGAATAATAATCCTCCGAATGCTTGGGGGATGAGGAGGGATGTGATGGGTGTTAATGCCTCGAGGGTT TCATCTGTGTCGCCGGGGTCGAATCCGGTGTCAAAGTTTGCTCAAGCAAGTGCGCTTGAAAAGGTATCTTCAGGAATGTGGCAGTCAAAGAGTCCTGGTG AACTTTTACCACATTTGATTTATTCACAGGAGAGTAATGCAAGTCATAGTGTGGATGTGAGTAGGGAGAAGGGTGATTATGATAATTCAAGGGGAGGTCA AGCTGAAAGTGGTAGGGTCGCAGGAGATAGGAATCAGGGTGGGGGGAGGACATTGCCGAATCATAGGAGGGATCAACCTCAAATGCACTCAGAAGAGTTT CATAGTGGAGGTATTGTCAGCTCGCAAACTCGACCAGCAATGCCCCCAGAAGTATCAGAACGACCTAAGCTGAATGTTATTGCAAGAACTAAAGCATTAG AGAGACCAGAAAATGACTTCAGACAGGGGTACCAGCAACCTGTAGTATCTGGGAAGATTGAAATCGCCCATGAATTGTATGGAAATGGAAATCCTTCAAA GCCAGGGTTGGCTGATACCAAGAGTGGTAGTCAGCCAGCTGAGAGACCACTTGAACGTCCCAAATTGAATTTGAAGCCTCGCTCACAACCTGTTGAACAA TCTGATGGAAGCCTTGAAAGAGAAAGGAGTTCATTGTTTGGCGGTGCTCGTCCACGGGAATTGGTTCTCAAGGAACGAGGTGTAGATGACATAGCAATTA ATAACCTTGACATGAATCTTTCGCCCAACAGGGTGAATTCTCCCAAGAATGAAATCACATCAGAACATGTGGCTGCAACCGCTCATCAGAGTCAGAAAAA TGACAACCGTGGGGCTACCAGCCGAAGAAACGGGAGGGATTCTGAGAAGAAAGATCAACAGATGGACCATGAGAAAACTGACATGGAAAGGAAGAACTGG AGGAATGATAAATGGAAAAGCAGCAAGGATGCCAAAGACCAGCGACCTGAACCTGAAACCTGGCGCAAACCTAATGAAGAACCAAAAACAACTTCATCTG ACGCCGCAGGAAACCGCCCTGGTAAAGTATCATCTGCCTTGGAGCTAGCTCAGGCTTTCTCAAAGTCGGCCTCAGATCAAAAGAGTCAGAATATACGTTC TTCTCAAAGAGGCGCGCCTGCAGGTAATGATCAGCCCTTTTCACGACTGACAGACACCCCTGAGCATCAGCCAGCACCAACCACAGAGCCAACCACACGA CATTGGATAAATGGTTACTGA
AA sequence Show only first row Show all	>Potri.007G119200.1 pacid=42765989 polypeptide=Potri.007G119200.1.p locus=Potri.007G119200 ID=Potri.007G119200.1.v4.1 annot-version=v4.1 MSKKKTASTMSLKDFHGGSIPSDLPLPSAPGVMMKPGSDRNASANWGNNLMRPKSSGAARGFDEKASFLSHQAPIGRNFDEDERKPLDGSSAPRRTISDE NVRASALVPQELKPEYVSGSSVRVPDRPVTSPVPQSMSLGASLSPLRPGGGSVVVSSQNSGGWGGNSAITSGGNGQGVNNNPPNAWGMRRDVMGVNASRV SSVSPGSNPVSKFAQASALEKVSSGMWQSKSPGELLPHLIYSQESNASHSVDVSREKGDYDNSRGGQAESGRVAGDRNQGGGRTLPNHRRDQPQMHSEEF HSGGIVSSQTRPAMPPEVSERPKLNVIARTKALERPENDFRQGYQQPVVSGKIEIAHELYGNGNPSKPGLADTKSGSQPAERPLERPKLNLKPRSQPVEQ SDGSLERERSSLFGGARPRELVLKERGVDDIAINNLDMNLSPNRVNSPKNEITSEHVAATAHQSQKNDNRGATSRRNGRDSEKKDQQMDHEKTDMERKNW RNDKWKSSKDAKDQRPEPETWRKPNEEPKTTSSDAAGNRPGKVSSALELAQAFSKSASDQKSQNIRSSQRGAPAGNDQPFSRLTDTPEHQPAPTTEPTTR HWINGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	0	1
AT1G24560			unknown protein		Potri.010G049400 [exp]	1.00	0.7982
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	3.87	0.7372
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	4.89	0.7648
AT4G27500		PPI1	proton pump interactor 1 (.1)		Potri.011G119700 [exp]	6.55	0.6472
AT4G35890			winged-helix DNA-binding trans...		Potri.005G109400 [exp]	15.42	0.7348
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	17.60	0.7236
AT3G17100	bHLH	bHLH147, AIF3	sequence-specific DNA binding ...		Potri.010G147400 [exp]	19.67	0.7244
AT1G47330			CBS domain-containing protein ...		Potri.014G196900 [exp]	22.44	0.6383
AT4G29680			Alkaline-phosphatase-like fami...		Potri.006G150900 [exp]	23.10	0.7349
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.002G231100 [exp]	23.74	0.7376

Compare expression of checked genes

Potri.007G119200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.