Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SDG904
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15180 2428 / 0 SDG2, ATXR3 SET domain protein 2 (.1) AT3G59960 59 / 1e-08 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT1G77300 61 / 2e-08 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT2G44150 58 / 6e-08 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT4G30860 54 / 1e-06 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G17770 53 / 3e-06 SDG17, SUVH7 SET DOMAIN PROTEIN 17, SU(VAR)3-9 homolog 7 (.1) AT5G42400 52 / 8e-06 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT1G05830 51 / 1e-05 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2) AT1G76710 49 / 4e-05 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT4G27910 49 / 8e-05 SDG16, ATX4 SET domain protein 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G041100 [exp] 4101 / 0 AT4G15180 2386 / 0.0 SET domain protein 2 (.1) Potri.005G260100 [exp] 69 / 4e-11 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 69 / 6e-11 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.005G182100 [exp] 67 / 2e-10 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 64 / 1e-09 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.007G147200 [exp] 58 / 5e-08 AT2G44150 477 / 2e-169 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.005G195400 [exp] 55 / 7e-07 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.017G000400 [exp] 54 / 8e-07 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.002G232800 [exp] 54 / 2e-06 AT1G05830 1261 / 0.0 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039707 [exp] 2890 / 0 AT4G15180 2342 / 0.0 SET domain protein 2 (.1) Lus10018496 [exp] 2368 / 0 AT4G15180 2019 / 0.0 SET domain protein 2 (.1) Lus10022112 [exp] 106 / 2e-25 ND / Lus10017731 [exp] 87 / 7e-20 ND 36 / 0.003 Lus10028662 [exp] 69 / 9e-11 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10000967 [exp] 68 / 1e-10 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10016051 [exp] 66 / 7e-10 AT5G42400 362 / 9e-104 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10025172 [exp] 65 / 1e-09 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Lus10006889 [exp] 59 / 3e-09 ND / Lus10039118 [exp] 57 / 9e-08 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.007G119300.4 pacid=42765454 polypeptide=Potri.007G119300.4.p locus=Potri.007G119300 ID=Potri.007G119300.4.v4.1 annot-version=v4.1 ATGGGTGATGGAGGTGTCGCATGTATGCCTTTGCAGCACAGTAGTAATAATATCATCATGGAAGAAAGATTTCCTGTTCAAGAAAAGAATACAACAACAA CAGTAACAGCAGCAGTTCCATCAACAACAACGACGAAAGTGGAAACTGTAAACAACAACAGTAACAGTGGTAGTGGTGGTGGTAGTAGTAATAATAATAA TAATAATGTCAGTAGTGGTGACAAGAAGGATAACGGAAAAAGTAATAGCAGCAACAATGGGGTGACCGGGAAGGTGAAGAAGGTGAAGAGGATAGTTAAG GTGAAAAAGGTGGTGAGGAAAGTAGTGGTGGGGGAGAAGAAAGGAGTGGGATTGGTGAGAGAAGTTAAGAGTGCTTGTGGGAGTGGTAGTAAGGAAGTAG TGGTGTTGGAGAAGAAAGAATCAGGATTGAAGAAGGAAGAAAAGAGCAAGGAAGTGACAGCTGAGAAGAAAGAATCAGGATGGAAGAAGGAATTGGCAGC TGAGAAGAAAGAATCAGGTTTGAAGATTAGTAGTGGTAGCAAGACAGTTGAAAATGGTGATGGTTTGGGTTCTGGGGATACTAAGTTGCAGAGTGGTAGT AATAATATTAAAGAGGAAGTTGAAGAGGGGGAATTAGGGACATTGAAGTGGCCAACTAAAGGGGAAATTGAGAATGGCGAATTTGTTCCTATACCAGAGA AGCCAAGGAGAAGTGAGATTGAGAGAGGAGAGATTGGTAGTGAGAAATGGAAGAAAGGGGATATAGAGAAAGGGGAGATTGTTTCTGGTAATAAATGGCA GAGAGGGGAAGTTGTTCGAGATGAAATCGAGAAAGGTGAGTTCATTCCGGACAGGTGGAATGGTAAAGATGAGTATGGCTACATTAGGTCTCGTGGCAGG TATGACATGAGTAGGGAGCGGACGCCACCTTCCGGGAAGTATTCTTGTGAGGATGTTAACCGAAGGAAAGAGTTGACTAGAAGTGGGGGTAGTCTGCACA GTAAAAGTTCTATGAGGTGGGAGAGTGGCCAGGAAAGGAGTACGAGGATCAGCTCAAAGATTGTTGATGAAGAAGGTTCGTATAAGAGTGAGTACAGCAA TGGTAAGAACCCTGGAAGGGAGTATTCTTCTGGTAACAGATTGAAACGTCATGGTACCGATTCTGATAGCACCGAGCGCAAACATTATGGGGATTACTCT AGTTCTAAAAGCAGGAGACTCTCTGAGGATGGTTCCCGCTATGCTTACTCAGAGCACTATTCACGTCACTCTGTGGAGAGGTTCTATAAAAACTCTTCTT CTTCCTCCAGAGTATCTTTATCAGACAAGTACTCATCCAGGCATCATGAGTCCACTTTGCCCTCTAAGGTTGTTTATGACAGGCATGTTCATTCCGACTG GTCCCCACATGAGAGGCCCCGATACAATGATCACAGGGACCGAAGTCCAATCCGTCATGAGAAATCTCCCTATGGCCGAGAAAGGACACCATATGGACTG GAGAGATCTCCATATGGGCGAGAAAGATCACCATATGGACGTGAGAGGTCACCATATTGGCGAGACAGATCCCCATATGGACATGATAGATCCCCCTATG GACGTGAGAAATCCCCATACGGACGAGAGAGATCCCCATATGGACTTGAGAAATCACCTTATGACCGAAGCCGCCATTACGAGCATAGAAAAAGGAGTCC TTCTTATGTGGAAAGGTCCCCACAGGATCGTGCCCGGCACCATGACCGCAGCGATCGGACACCAAATTACTTGGAGCGATCCCCACATGATCGGGCTAAG CCCAATAATTATAGAGAAGCAAGAAAGGGGGGAGCCACTGAGAAGCGGAACTCTCAGTATGGTAATAAACAGCAGGAGGATAAGATCAGCCAAAAGGATC CTGATGCAAGGGACACAGAACCCTCAGCTAAGGAATCTCAAGATAAAAGTAGCGTGCTTAATCTTGATGGTTTGGATGAAAAGAATGCCAGCAGTGAAAC TCGCATAGAAGAGAAGTCCGAGAGCCCAAGGATAAATGTTAAAGAACCTCCTCAAGTTGATGGACCTCCTCCTGAAGAACTGCAATCTATGGAGGAAGAT ATGGATATATGTGATACGCCACCACATGTCCCTGCTGTGGCTGATACATCAACTGGTAAATGGTTTTACCTAGATCATTTTGGTGTGGAATGTGGCCCTT CAAAGTTATGCGAGCTTAAAGCGCTTGTTGATGAAGGAAGTCTTATGTCTGATCACTTTATCAAGCACTTGCATAGTGATAGGTGGTTAACAATCGAAAA TGCACTTTCACCATTTGTGCCAGTGAATTTCCCATCTGTTGTGCCAGATGCTATAACTCAACTAGTAAGCCCTCCAGAGGCTCCTGGTAATTTATTGGCA GATACTGGAGATATCGGGCAATCTTGTGCTCAGATTGGCGAGGGAGTGTCAGGGAATTTTCTGAAACCACCAGTCTGCCCTGATCACAGTGAAATTGCTT CTGAGTCTTTAGAAGATCTACAGATTGATGAAAGAGTTGGAGCTCTATTGGAGGGTTTTTCTGTTGTTCCTGGCAGTGAGCTAGAGACTGTTGGAGAAGC TCTGCAAATGACATTTGAACATGTGCAATGGGAGGGATGTATAAAAGCAGAAGGTTTTACCTGGCAGCGAGCTACCACTTCTGAACAACAGGATGAAAAC AGTGATGAATTACTAAGACATTCTGATGTGAAAACAAACGTAGCTGTAGAAGCATGGCCAGCTACTCTTGCTGACAAGGATGATGGCTTTGCCTCTTCTG TTGATTCCACTGACTGGTTTTCTGGCCGATGGTCTTGCAAGGGTGGAGACTGGAAGAGGAATGAGGAGTCTGTCCAGGACAGATTTACGCGAAGGAAACT TGTTCTCAATGATGGATTCCCAGTGTGCCACATGCCAAAGTCTGGGTGTGAGGACCCACGGTGGCATATAAAAGATGATTTGTATAATCCTTCTCAAAGC AGGAAGCTTGACCTACCTCCTTGGGCTTTCTCCAGCTCAGATGATAGAAATGATACTGGTGGTGTCAGTAGATCAACCCTCAATAAACCTCCAATAACAA GGGGAGTGAAAGGAACCGTGCTACCAGTGGTCAGGATAAATGCATGTGTGGTTCAGGACCATGTTGTTTCTGAGACCCGCACTAAAGTTCGAGGGAAGGA CAGATATCATTCAAGATCTGCTCGAACTCATTCTGCAACTAATGATGTGAAGAGTTCATCAGTGGAGTGCGATTCACAATCCAGAGTTGTCAATGATCAA GACTCACATGGATGTTGGAAGTCGACTGCATCACTTAACACTCCCAAAGACCGACTTTGTACAGCAGATGACTTACAATTGAATTTGGGTGACTGGTATT ACTTAGATGGTTCTGGCCATGAACGAGGTCCATTATCATTTTCAGAGCTTCAGAACTTGGCGGATAAAGGTACCATCCAAAAGTATAGCAGCGTTTTCAG GAAATTTGATAGAGTGTGGGTTCCGGTTGCATCAGCCACAGAGACTTCTGAAGCCGCTGTCAGAATTCAACAGTCAAATGTTGAGCTGTCTGTTGGTTCT TCAGGAACTCTTTTGAAATCCCAGACTGCTGCTAATATTGAGAGTAACAAAGATTCTAGTTCATTTCACAGCCTTCATCCACAGTTCATCGGTTTTACCC GGGGGAAGCTACATGAATTGGTAATGAAATCGTACAAGAACCGGGAGTTTGCTGTAGCCATAAATGAGGCCTTGGATCCATGGATTGTTGCAAAACAGCC TCAGAAAGAGCTCGATAAACATATGTACCTCAAATCAGAAATAGATGTACGTGTTGGAAAAAGAGCCTGGATGCAGCCTGACCAAATTGTTAAGGATAAT GAAATGGAGGAAGACACATTGCACAAGGTTGAAACCACTTTTGAGCAACTATGTGGTGATACCAATTTCCACAGAGAAGAGAGCATGTGTTCAGAGATTG AGGCAGGAAGCTGGGGTTTATTGGATGGTCATATGCTGGCACGAATCTTTCATTTTCTGAGATCTGACTTGAAATCCCTAGTCTTTGCTTCCTTGACTTG TAAACACTGGAGAGCTGCTGTTAGTTTTTACAAGGGCATATCAATACAGGTTGATCTTTCATCTGTGGGTCTCAACTGTACTGACTTGATGGTGAGGAGT ATCATGAATGGTTATAACAAAGAAAAGATTAATGCAATGGTGCTGACGGGTTGTACAAATGTCACTTCTGGCATGCTTGAAGAAATTCTCCGCTCTCTCC CATGTTTATCTTCTATAGATATTAGAGGCTGCACCCAGTTCATGGAGTTGGTCCATCAATTTCCACGTGTTAGTTGGCTCAAGAGCCGCACAAGGATCCC TGAGGAGTCAAATTCTAAACTAAGGAGTCTTAAACAAATCAGTGGGAGAGATGATTTTGGGGAGCTGAAGGAGTATTTTGATAGTGTGAATAAGAGAGAC TCAGCAAATCAATTATTTCGTCGAAGTTTGTACAAACGCTCAAAAGTGTTTGATGCTAGAAAGTCATCATCCATTCTATCCAGGGATGCTCGTATGAGGC GATGGGCAGTCAAGAAATCTGAAAATAGCTATACAAGGATGGAGGGGTTTCTTGCTGCAGGTTTAAAGGACATAATGAAGGAGAATATCTTTGATTTTTT TGTGCCTAAGGTGGCAGAAATTGAGGATAGGATGAAGAATGGCTATTATGTTGGGCATGGATTGAGGTCGGTCAAGGAGGATATTAGTCGAATGTGCAGG GATGCTATTAAAGTAAAGAATCGGGGTGCTGGAGACATGAATCACATCATTACATTGTTTTTTCAACTAGCCTCTCGTTTGGAAGAGAGTTCTAAGTTTT CTTATGAAAGAGATGAGCTCATGAAGTCATGGAAAGATGATTTATCTGCAGCGTTGGATTCTGCTCCAATGAAACATAAGAAGAAAGCTACTGGAAAGAA GTACATGAATAGGAGCAATGGCACTATCCCTGCAAATGGTAGTTTTGATTATGGAGAATATGCATCTGATCAGGAAATTAAGAAGCGAATATCCAAACTC AACAGAAAATCCATGGATTCAGGAAGTGAAACTTCTGATGACCGGTCTTCTGAAGATGGCAGGAGTGGTAGTGATAGTACTGCCTCAGATACAGAAAGTG ACTTGGATTTCCGATCAGAAGGCCGAACTGGGGAGTCAAGAGGAGATCGATACTGTATGACAGATGAGGATGAACGTGAATGGGGTGCTCGCATGACAAA AGTGAGTCTGGTTCCTCCTGTTACTAGGAAGTATGAAGTCATAGACCAATATCTTATTGTAGCAGATGAGGAGGATGTCCAGCGAAAGATGTCTGTATCT TTGCCAGATGACTATGCTGAGAAGCTTGATGCACAGAAAAATGGCACTGAGGAATTAGATATGGAACTTCCTGAAGTCAAGGATTACAAACCTAGGAAAC AGCTTGGAGATGAAGTTATAGAACAAGAAGTTTATGGAATTGATCCCTATACCCACAATCTTTTACTTGATTCCATGCCTGAAGAAGTGGACTGGCCTTT GTTGCAAAAACATATGTTTATTGAAGATGTGCTACTCTGTACCCTGAATAAGCAAGTCAGGCACTTTACTGGCGCTGGGAACACTCCGATGACATATGCT ATACAGCCTGTTGTTGAAGAAATTGAACAAGCTGCTATGGAGGATTGTGATATACGAAAAATGAAAATCTGTCGGGGTATCTTGAGAGCCATAGATAGTC GACCTGATGACAAATATGTTGCTTACCGGAAGGGGCTTGGTGTTGTATGCAACAAAGAAGGTGGTTTTGGAGATGATGACTTTGTTGTGGAGTTTTTGGG AGAGGTATATCCTGCATGGAAATGGTTTGAGAAGCAAGATGGGATTCGATTATTACAGAAAGACAGTAAAGAACCAGCTCCAGAATTTTACAACATTTAT CTTGAGAGGCCAAAGGGTGATGCTGATGGTTATGATTTGGTTGTCGTTGATGCCATGCATAAGGCGAACTACGCAAGTCGAATCTGTCACTCATGCAAAC CTAATTGTGAAGCAAATCATTCAGATTATTATCAATGTGAATGCAGAGTTACTGCTGTAGATGGTCAGTACCAGATTGGAATCTACACTGTCCGTGAAAT CCAACATGGCGAGGAGATAACATTTGATTACAATTCTGTGACAGAGAGTAAAGAAGAATATGAAGCGTCTGTTTGTTTGTGTGGTAGCCAAGTTTGCAGG GGCAGCTACTTAAATTTGACAGGTGAAGGGGCTTTCCAAAAGGTGTTGAAGGAGTGGCATGGATTACTGGATCGACATTATTTGATGCTCGGAGCTTGTG AATTAAATTCTGTGTCTGAAGAAGATTATCTGGACTTGGGTAGGGCTGGTTTAGGCAGTTGCTTACTTGGTGGGTTGCCAGATTGGGTGGTTGCATATTC TGCTCGTCTGGTCAGATTTATAAATCTGGAAAGAACAAAGCTTCCTGAGGAAATTCTGAGGCATAATTTGAAAGAGAAAAGGAAATATTTTGCAGATACA TGTCTTGAGGTCGAGAGAAGTGATGCTGAGGTTCAGGCTGAAGGTGTCTACAACCAGAGGCTTCAAAATTTGGCTGTTACTCTTGACAAGGTGAGGTATG TAATGAGGTGCATATTTGGTGACCCAAAGCAAGCTCCACCTCCGCTGGAGAAGCTTACTCCTGAAGAAACTGTTTCCTTCCTCTGGAAAGGAGACGGATC ACTTGTTGATGAACTTCTGCAGTGCATGTCTCCTTATATGGATGAAGACATGCTAAATGACCTCAAGTCCAAGGTTTGTGCGCATGATCCATCAGATTGT GATGACATTCAGAAAGCTCTTCAGAAGTCTTTATTGTGGTTGAGGGATGAGGTGCGCAGTCTTCCATGTACATACAAGTGCCGGCATGATGCTGCAGCTG ACTTAATCCATGTTTATGCTTATACAAAGAGCTTCTTTAGAGTTAGGGATTATGATGCATTTACTTCTCCACCAGTTCACATTAGTCCACTTGACTTAGG CCCCAAATGTGCTGATAAGTTAGGGGGTCTTCCCCACAAGTATCAAAAAACCTATGGGGGGAGCTATTGCATGGGGCAGTTGATATTTTGGCATGTCCAG ACTAACACCGAGCCTGATTTTACCCTTGCTAAAGCGAGTAAGGGCTGCTTGTCATTACCTGAAATTGGTTCCTTTTACGCTAAGGTTCAGAAGCCATCAC AGCAGCGCATTTATGGTCCAAAGACCGTGAAAATGATGTTGGAAAGAATGGAGAAGTACCCTCAGAAACCGTGGCCCAAGGACCAAATATGGTCATTCAA GAACTCTCCAAAAGTTTTTGGCAGCCCAATGCTAGATGCTGTATTGAACAATGCCCCACTAGACAGAGAAATGGTACATTGGTTGAAGCACAGGCCTACA GTATACCAAGCGGTGTGGGATCGATGA
AA sequence Show only first row Show all	>Potri.007G119300.4 pacid=42765454 polypeptide=Potri.007G119300.4.p locus=Potri.007G119300 ID=Potri.007G119300.4.v4.1 annot-version=v4.1 MGDGGVACMPLQHSSNNIIMEERFPVQEKNTTTTVTAAVPSTTTTKVETVNNNSNSGSGGGSSNNNNNNVSSGDKKDNGKSNSSNNGVTGKVKKVKRIVK VKKVVRKVVVGEKKGVGLVREVKSACGSGSKEVVVLEKKESGLKKEEKSKEVTAEKKESGWKKELAAEKKESGLKISSGSKTVENGDGLGSGDTKLQSGS NNIKEEVEEGELGTLKWPTKGEIENGEFVPIPEKPRRSEIERGEIGSEKWKKGDIEKGEIVSGNKWQRGEVVRDEIEKGEFIPDRWNGKDEYGYIRSRGR YDMSRERTPPSGKYSCEDVNRRKELTRSGGSLHSKSSMRWESGQERSTRISSKIVDEEGSYKSEYSNGKNPGREYSSGNRLKRHGTDSDSTERKHYGDYS SSKSRRLSEDGSRYAYSEHYSRHSVERFYKNSSSSSRVSLSDKYSSRHHESTLPSKVVYDRHVHSDWSPHERPRYNDHRDRSPIRHEKSPYGRERTPYGL ERSPYGRERSPYGRERSPYWRDRSPYGHDRSPYGREKSPYGRERSPYGLEKSPYDRSRHYEHRKRSPSYVERSPQDRARHHDRSDRTPNYLERSPHDRAK PNNYREARKGGATEKRNSQYGNKQQEDKISQKDPDARDTEPSAKESQDKSSVLNLDGLDEKNASSETRIEEKSESPRINVKEPPQVDGPPPEELQSMEED MDICDTPPHVPAVADTSTGKWFYLDHFGVECGPSKLCELKALVDEGSLMSDHFIKHLHSDRWLTIENALSPFVPVNFPSVVPDAITQLVSPPEAPGNLLA DTGDIGQSCAQIGEGVSGNFLKPPVCPDHSEIASESLEDLQIDERVGALLEGFSVVPGSELETVGEALQMTFEHVQWEGCIKAEGFTWQRATTSEQQDEN SDELLRHSDVKTNVAVEAWPATLADKDDGFASSVDSTDWFSGRWSCKGGDWKRNEESVQDRFTRRKLVLNDGFPVCHMPKSGCEDPRWHIKDDLYNPSQS RKLDLPPWAFSSSDDRNDTGGVSRSTLNKPPITRGVKGTVLPVVRINACVVQDHVVSETRTKVRGKDRYHSRSARTHSATNDVKSSSVECDSQSRVVNDQ DSHGCWKSTASLNTPKDRLCTADDLQLNLGDWYYLDGSGHERGPLSFSELQNLADKGTIQKYSSVFRKFDRVWVPVASATETSEAAVRIQQSNVELSVGS SGTLLKSQTAANIESNKDSSSFHSLHPQFIGFTRGKLHELVMKSYKNREFAVAINEALDPWIVAKQPQKELDKHMYLKSEIDVRVGKRAWMQPDQIVKDN EMEEDTLHKVETTFEQLCGDTNFHREESMCSEIEAGSWGLLDGHMLARIFHFLRSDLKSLVFASLTCKHWRAAVSFYKGISIQVDLSSVGLNCTDLMVRS IMNGYNKEKINAMVLTGCTNVTSGMLEEILRSLPCLSSIDIRGCTQFMELVHQFPRVSWLKSRTRIPEESNSKLRSLKQISGRDDFGELKEYFDSVNKRD SANQLFRRSLYKRSKVFDARKSSSILSRDARMRRWAVKKSENSYTRMEGFLAAGLKDIMKENIFDFFVPKVAEIEDRMKNGYYVGHGLRSVKEDISRMCR DAIKVKNRGAGDMNHIITLFFQLASRLEESSKFSYERDELMKSWKDDLSAALDSAPMKHKKKATGKKYMNRSNGTIPANGSFDYGEYASDQEIKKRISKL NRKSMDSGSETSDDRSSEDGRSGSDSTASDTESDLDFRSEGRTGESRGDRYCMTDEDEREWGARMTKVSLVPPVTRKYEVIDQYLIVADEEDVQRKMSVS LPDDYAEKLDAQKNGTEELDMELPEVKDYKPRKQLGDEVIEQEVYGIDPYTHNLLLDSMPEEVDWPLLQKHMFIEDVLLCTLNKQVRHFTGAGNTPMTYA IQPVVEEIEQAAMEDCDIRKMKICRGILRAIDSRPDDKYVAYRKGLGVVCNKEGGFGDDDFVVEFLGEVYPAWKWFEKQDGIRLLQKDSKEPAPEFYNIY LERPKGDADGYDLVVVDAMHKANYASRICHSCKPNCEANHSDYYQCECRVTAVDGQYQIGIYTVREIQHGEEITFDYNSVTESKEEYEASVCLCGSQVCR GSYLNLTGEGAFQKVLKEWHGLLDRHYLMLGACELNSVSEEDYLDLGRAGLGSCLLGGLPDWVVAYSARLVRFINLERTKLPEEILRHNLKEKRKYFADT CLEVERSDAEVQAEGVYNQRLQNLAVTLDKVRYVMRCIFGDPKQAPPPLEKLTPEETVSFLWKGDGSLVDELLQCMSPYMDEDMLNDLKSKVCAHDPSDC DDIQKALQKSLLWLRDEVRSLPCTYKCRHDAAADLIHVYAYTKSFFRVRDYDAFTSPPVHISPLDLGPKCADKLGGLPHKYQKTYGGSYCMGQLIFWHVQ TNTEPDFTLAKASKGCLSLPEIGSFYAKVQKPSQQRIYGPKTVKMMLERMEKYPQKPWPKDQIWSFKNSPKVFGSPMLDAVLNNAPLDREMVHWLKHRPT VYQAVWDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.007G119300 [exp]	0	1	SDG904
AT4G15180		SDG2, ATXR3	SET domain protein 2 (.1)		Potri.017G041100 [exp]	1.00	0.9832
					Potri.003G148601 [exp]	2.44	0.9492
AT5G53440			unknown protein		Potri.012G013800 [exp]	3.74	0.9307
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.009G047800 [exp]	3.87	0.9345
AT2G16485			nucleic acid binding;zinc ion ...		Potri.009G123800 [exp]	4.00	0.9431
AT4G31880			unknown protein		Potri.006G186700 [exp]	4.69	0.9056
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Potri.001G253400 [exp]	5.29	0.9154
AT4G21430		B160	Zinc finger, RING-type;Transcr...		Potri.011G041400 [exp]	5.74	0.8839
AT2G16940			Splicing factor, CC1-like (.1....		Potri.004G177000 [exp]	5.74	0.9182
AT2G25730			unknown protein		Potri.006G244900 [exp]	5.83	0.9115

Compare expression of checked genes

Potri.007G119300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.