Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G16740 438 / 7e-147 ATTPS03 terpene synthase 03 (.1.2) AT3G25810 417 / 2e-138 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G25830 415 / 1e-137 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) AT3G25820 415 / 1e-137 ATTPS-CIN "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) AT2G24210 413 / 1e-136 AtTPS10 terpene synthase 10 (.1) AT4G16730 400 / 2e-132 AtTPS02 terpene synthase 02 (.1) AT5G23960 298 / 3e-93 ATTPS21 terpene synthase 21 (.1.2) AT1G61680 280 / 6e-86 ATTPS14 terpene synthase 14 (.1.2) AT1G70080 273 / 9e-83 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 259 / 2e-77 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023006 [exp] 504 / 2e-172 AT3G25830 540 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G023008 [exp] 498 / 1e-170 AT3G25830 535 / 0.0 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.019G022338 [exp] 477 / 7e-162 AT3G25830 483 / 8e-165 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308300 [exp] 472 / 1e-159 AT3G25830 507 / 4e-174 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.001G308200 [exp] 471 / 2e-159 AT3G25810 499 / 4e-171 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.007G118600 [exp] 460 / 4e-155 AT4G16740 462 / 3e-157 terpene synthase 03 (.1.2) Potri.017G041700 [exp] 442 / 6e-148 AT3G25810 432 / 3e-145 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Potri.011G031800 [exp] 406 / 3e-134 AT3G25830 382 / 5e-126 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1) Potri.015G085500 [exp] 393 / 1e-129 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012312 [exp] 388 / 1e-126 AT4G16740 363 / 3e-118 terpene synthase 03 (.1.2) Lus10006356 [exp] 381 / 5e-124 AT3G25820 371 / 3e-121 "terpene synthase-like sequence-1,8-cineole", terpene synthase-like sequence-1,8-cineole (.1.2) Lus10006355 [exp] 376 / 7e-122 AT2G24210 361 / 7e-117 terpene synthase 10 (.1) Lus10018500 [exp] 367 / 6e-119 AT4G16740 419 / 1e-140 terpene synthase 03 (.1.2) Lus10039713 [exp] 367 / 1e-118 AT4G16740 409 / 4e-136 terpene synthase 03 (.1.2) Lus10018501 [exp] 365 / 1e-117 AT4G16740 413 / 1e-137 terpene synthase 03 (.1.2) Lus10033643 [exp] 365 / 1e-117 AT4G16730 356 / 2e-115 terpene synthase 02 (.1) Lus10038179 [exp] 358 / 2e-115 AT3G25810 351 / 2e-113 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10001110 [exp] 352 / 6e-114 AT3G25810 362 / 1e-118 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10025922 [exp] 348 / 1e-111 AT3G25810 353 / 3e-114 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.007G119700.3 pacid=42765653 polypeptide=Potri.007G119700.3.p locus=Potri.007G119700 ID=Potri.007G119700.3.v4.1 annot-version=v4.1 ATGTTGTCTATTATTTTTGAAAACTCAAAATTATATTATAACAATTATCTTCTCTTTAAACTCAAGCTTTTGACCCAATTTTCTATTTATAAATACTGCA TGATTTATATCGTGTTTCTCATACCAAGTCGTTTCTCCAATTTTCTTGATCTCGAGATCATATCGGCTTCTCCAATGGAATTTTCAGTGTTTGCCCTTTC TCCCTCGAGTCTAGTACTCCCCTCACATTTTCCTAAAACGACCATACTTTCACGGAGCCATATTTCAGCGAGAAACAAGCTATTCCAATCATCAAGACTA CCCTCTCTCAAGAATGCTTCCATATTTAAGATATTGAGCATGAGTGATGAGGAACGAAGATCAGCTAATTATCATCCTAGCGTCTGGGAACTCCAACTCA TTGAGTCCTTAAGCACTCCCTATTCATATGAGCTTCACGCCAATCGATTGGAGGAGCTGAAGCAAGAAGCTAAAAGAGCACTCGTGTCCACCAATGAGCC TCGTGCCAAATTAAAGCTGATTGATTCAATTCAACGGCTGGGAGTTGCTTATCATTTCGAAAGAGAGATTGAAGAAGCTATAAAGCTTACTGAACTAGAC GTTAATGGGGATCTTCATACAACTTCATTGCACTTTCGGCTTCTAAGGCAGCATGCCTTTTCAGTAAGCACAGATGTGCTTGGAAAATTCAGAAGTAATA GAGATGGGAAATTCAAGGACAGCATAAGGACGGACGTTGCAGGACTTTTGAGTTTGTATGAAGCTTCATACCTTGGAGTGCCTGGAGAAGATCATGTTTT AGAAGAAGCCAAAAATTTCAGTAGTAAACATCTCAAGTCATTGTTAGAGACAATAAAGGATGAATTTCTAGCTAAGCAAGTGAAACAATCATTAGAAGTT CCTCGGCATTGGAAGATGCCAAGGATTGAGGCTCGGGATTTCATTGATATTTATTCAAGTGATAATACGAGGAACTTAGATTTGCTTGAGCTAGCTAAGT TGGACTATAACCTTGTGCAATCACAACACCAAAGGGAGCTCAAAGAACTGGCAAGGTGGTGGGGTGCCCTAGGCTTCAAGGAGAAGCTGAGTTTTTCGCG AGATCGATTGATGGAAAATTATTTATGGGCAATGGGAATGGTGTTTGAACCTCAATTCTCGAAATGCAGGATAGGCCTCACCAAATTTGTATGCATTTTA ACAACAATTGATGACATATACGATGTATATGGATTACCGGAGGAGCTTGAGCTCTTTACCAAACTAGTAAATCGATGGGATTCCATGGCCATTGACGACC TTCCTGATTACATGAAGATATGCTATTTGGCCTTGTTTAACTTTGTTAATGAAATGGCATACGATGTAATGAGAGATCATGGCTTGTTTGTTTTACCCTA CCTTGTGGAAGAGTGGGCAAATCTCTGCGGATCATATTTGGTCGAAGCTCGGTGGTTTAGCAACAAGTATTCACCAACTTTGAGTGAGTACTTGGAAAAT GCAAGGACATCGATTGGCAGTCCTGCAGCCCTTGCCCACGCTTGTATGTTGCTGGGGAGCCCCGTAGCACAAAGTTCACTGATGGATTGCTTCAAGCATG GCAATGATCAATTAATCTATTGGTCATCCTTGATTACTCGACTTAGTGATGATTTGGGCACATATACGGCAGAGAGTGAGAGAGGTGATGTGACAAAATC AATTCAGTGCTACATGATTGAAAAGGGTGCATCTGAAAAAGAATCAAAAGAGCACATTAAAGGCTTGATTAACCAAGCATGGAAGGAACTAAACAAGGAG AATTCCAAATGTTCTCTTCCTAAACCTCTTGTAAACATGTCCTTGAACATGGCTCGAACTGCTCAATGCATCTTCCAATTTGGAGATGGCATTGGTACTT CTACTGGGGTCACTAGAGATCGTTTAACGTCATTGATTGTCGAACCTATCCCGGTCAAAGAACCTTAG
AA sequence Show only first row Show all	>Potri.007G119700.3 pacid=42765653 polypeptide=Potri.007G119700.3.p locus=Potri.007G119700 ID=Potri.007G119700.3.v4.1 annot-version=v4.1 MLSIIFENSKLYYNNYLLFKLKLLTQFSIYKYCMIYIVFLIPSRFSNFLDLEIISASPMEFSVFALSPSSLVLPSHFPKTTILSRSHISARNKLFQSSRL PSLKNASIFKILSMSDEERRSANYHPSVWELQLIESLSTPYSYELHANRLEELKQEAKRALVSTNEPRAKLKLIDSIQRLGVAYHFEREIEEAIKLTELD VNGDLHTTSLHFRLLRQHAFSVSTDVLGKFRSNRDGKFKDSIRTDVAGLLSLYEASYLGVPGEDHVLEEAKNFSSKHLKSLLETIKDEFLAKQVKQSLEV PRHWKMPRIEARDFIDIYSSDNTRNLDLLELAKLDYNLVQSQHQRELKELARWWGALGFKEKLSFSRDRLMENYLWAMGMVFEPQFSKCRIGLTKFVCIL TTIDDIYDVYGLPEELELFTKLVNRWDSMAIDDLPDYMKICYLALFNFVNEMAYDVMRDHGLFVLPYLVEEWANLCGSYLVEARWFSNKYSPTLSEYLEN ARTSIGSPAALAHACMLLGSPVAQSSLMDCFKHGNDQLIYWSSLITRLSDDLGTYTAESERGDVTKSIQCYMIEKGASEKESKEHIKGLINQAWKELNKE NSKCSLPKPLVNMSLNMARTAQCIFQFGDGIGTSTGVTRDRLTSLIVEPIPVKEP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.007G119700 [exp]	0	1
AT5G14920			Gibberellin-regulated family p...		Potri.001G350600 [exp]	2.44	0.9066
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Potri.012G022500 [exp]	8.12	0.8964
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.007G084700 [exp]	10.58	0.8438
AT3G50170			Plant protein of unknown funct...		Potri.016G039600 [exp]	12.00	0.8515
AT2G22840	GRF	ATGRF1	growth-regulating factor 1 (.1...		Potri.014G012800 [exp]	12.12	0.8532
AT5G15150	HD	ATHB3, HAT7, AT...	HOMEOBOX FROM ARABIDOPSIS THAL...		Potri.017G081700 [exp]	16.15	0.8850
AT3G50170			Plant protein of unknown funct...		Potri.016G039601 [exp]	16.43	0.8545
AT3G62630			Protein of unknown function (D...		Potri.005G019600 [exp]	20.85	0.8456
AT3G49900			Phototropic-responsive NPH3 fa...		Potri.005G149400 [exp]	22.24	0.8498
AT5G19875			unknown protein		Potri.001G009300 [exp]	22.91	0.8387

Compare expression of checked genes

Potri.007G119700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.