Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61730 101 / 3e-23 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00390 99 / 3e-22 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00250 87 / 1e-18 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00238 85 / 9e-18 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G66420 82 / 3e-17 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT2G01370 78 / 4e-16 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G11510 79 / 1e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT1G44810 77 / 3e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G00610 76 / 5e-15 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1) AT4G25210 75 / 3e-14 GeBP DNA-binding storekeeper protein-related transcriptional regulator (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G075000 [exp] 278 / 7e-90 AT1G61730 75 / 8e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G088400 [exp] 97 / 1e-21 AT4G25210 133 / 2e-35 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G293900 [exp] 96 / 3e-21 AT4G25210 142 / 9e-39 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.001G261700 [exp] 80 / 5e-16 AT5G28040 239 / 9e-75 DNA-binding storekeeper protein-related transcriptional regulator (.1) Potri.009G056400 [exp] 75 / 3e-14 AT5G28040 229 / 3e-71 DNA-binding storekeeper protein-related transcriptional regulator (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028550 [exp] 91 / 1e-19 AT4G00390 122 / 1e-31 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10002794 [exp] 86 / 9e-19 AT4G01260 96 / 4e-23 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10018859 [exp] 86 / 1e-18 AT4G00390 115 / 9e-30 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10005506 [exp] 86 / 5e-18 AT4G00390 108 / 9e-27 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10004772 [exp] 79 / 1e-15 AT4G01260 95 / 1e-21 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10000940 [exp] 79 / 1e-15 AT5G28040 272 / 2e-87 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10015944 [exp] 77 / 6e-15 AT5G28040 264 / 2e-84 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10019007 [exp] 77 / 9e-15 AT5G28040 256 / 1e-81 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10017793 [exp] 70 / 3e-13 AT1G66420 72 / 6e-15 DNA-binding storekeeper protein-related transcriptional regulator (.1) Lus10010076 [exp] 68 / 6e-12 AT1G61730 58 / 5e-09 DNA-binding storekeeper protein-related transcriptional regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF04504 [poplar] [flax] DUF573 Protein of unknown function, DUF573
Representative CDS sequence Show only first row Show all	>Potri.007G119800.1 pacid=42765648 polypeptide=Potri.007G119800.1.p locus=Potri.007G119800 ID=Potri.007G119800.1.v4.1 annot-version=v4.1 ATGGCTCGAAGACGCCCCTTTGAAGTCGCCCCGCCTGCCGTTTCGTCTTCCGAGGAAGAAGAAGAAACCGATGGCGAAGAAGAAACTCCAAAAGGCACCG TCCAAGCCCAGCAAAACGGCACTGGTGAGAAACAAAACGATAACGAAAATGGCAGTGAAGACGACGACGACGACGACGACGATGATGATGAAGAGGAGAA AGAGAAACCCAATCTGCCGCCCTCCAAACCTTCGAAACCCGACTCGGAGTCCGACTCAGAAACTGACTCGGAAGATACCGAGTCAACTCAGCCACCGTCA CCTTCTCTTTCTGGCTTTACAATCAAGCCCATTTCGCCAAAGCGCAAACCCGGCCCAAAACTCGAGCAGCCCAAGAAGGAGAATGATGGAGAGGACAAGA AAGCTAAGAGGGGAGCTGGAGCGGGGGGTGGGGGGCCTCAACGTTTATGGAGTGATGAAGATGAGATTGTGATGTTAAATGGCATGGTTGAGTACCAGAT TGAGAAAGGGAAAAACCCTTTTGCGGATAATGGTGATTTCCATGGATTTGTGAAGAAATCGCTCCATGTTGATGCTACTAATAATCAGTTTTTGGATAAA ATCAGGAGGTTGAAGAAGAAGTATTTTACTGATGTGGAGAAGAATGAGAAAGAGATAGATGAGATTTTTAGTAAACCACATGATTTGGAGTGTGTGGAGC TTGCAAAGAAAATATGGGGTGCTGGTGGTATTGAGATGGGAAAAAAGGGCAACTTTAATAAAAAGAGTGGAAAAAATGTTAGTGGTGGTGGAGGTGGTGG AGGAGGAGAAGGAGAAGGAGAAGGAGGAGGTGGTGTTCGAGGAGGAGGGATTACTTTGGCCTTGGCGAAAAAGGGGAACGAGGAAGCGAATGGGGAGAAA GGGAAGCTGAGTGTGAAGAAGGGGAAGAGGGGTTCGAACGAGGAAGTGAAAGTAGAAGGAAAGGAAGGGGATTTGAAGAAGAAAAGGCAGGGTTTGGGTG GGGAGGCTGACGAGGGAGAGGCGGGGAATGTGAAGAAGGGGAAGAGGGGTTTGAGTGAGGAAGTTAATGGAGAAGGGAAGGGAAAGGGTGTAAAAAGGGA GAAGCGGGCCGCTGATGAGGAGATGAGTGGAGAAGGAGAAGAGGTGAATGTGATTGTGAAGAAGCAAAGGAGGTTGGTGAATGATGAAATTAATGGAGGA GGGATGGAGTTGAGTGTGAAGAAGCGAAATGCAGTGGCAAATGAGGAACTGGATAGAGAAGAGGCGGGGAGTGAGGATTTTTGGGATAAGTATCCGTATT TACGCTTAGCATTGGACGGTGAAATTTTGCCCGAGTATTTGAAGGAGAGAACAATGTTGGTGCTGGGGATGGTTGGAGAGGAAAAGTTGGTGGAGTTGGA AAGAGAATGGAGGAGTTTGATGAAAGCAAAGTTGGAGTTTATGGTGATGCAAAAGGACTTGATTGCAAAACAAATCAAGTTGAGTTTGGATGCTATGAAC TCTCAGGACACTTAG
AA sequence Show only first row Show all	>Potri.007G119800.1 pacid=42765648 polypeptide=Potri.007G119800.1.p locus=Potri.007G119800 ID=Potri.007G119800.1.v4.1 annot-version=v4.1 MARRRPFEVAPPAVSSSEEEEETDGEEETPKGTVQAQQNGTGEKQNDNENGSEDDDDDDDDDDEEEKEKPNLPPSKPSKPDSESDSETDSEDTESTQPPS PSLSGFTIKPISPKRKPGPKLEQPKKENDGEDKKAKRGAGAGGGGPQRLWSDEDEIVMLNGMVEYQIEKGKNPFADNGDFHGFVKKSLHVDATNNQFLDK IRRLKKKYFTDVEKNEKEIDEIFSKPHDLECVELAKKIWGAGGIEMGKKGNFNKKSGKNVSGGGGGGGGEGEGEGGGGVRGGGITLALAKKGNEEANGEK GKLSVKKGKRGSNEEVKVEGKEGDLKKKRQGLGGEADEGEAGNVKKGKRGLSEEVNGEGKGKGVKREKRAADEEMSGEGEEVNVIVKKQRRLVNDEINGG GMELSVKKRNAVANEELDREEAGSEDFWDKYPYLRLALDGEILPEYLKERTMLVLGMVGEEKLVELEREWRSLMKAKLEFMVMQKDLIAKQIKLSLDAMN SQDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61730	GeBP		DNA-binding storekeeper protei...		Potri.007G119800 [exp]	0	1
AT3G18600			P-loop containing nucleoside t...		Potri.009G045300 [exp]	2.00	0.8736
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.015G130900 [exp]	4.00	0.8541
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.002G060200 [exp]	4.47	0.8714
AT1G75335			unknown protein		Potri.019G095600 [exp]	5.19	0.8570
AT5G62440			Protein of unknown function (D...		Potri.013G022500 [exp]	5.47	0.8521
AT2G17870		ATCSP3	ARABIDOPSIS COLD SHOCK DOMAIN ...		Potri.005G112800 [exp]	8.24	0.8204
AT3G05060			NOP56-like pre RNA processing ...		Potri.013G032300 [exp]	9.16	0.8419
AT5G05210			Surfeit locus protein 6 (.1.2)		Potri.010G064100 [exp]	9.38	0.8136
AT4G25340		ATFKBP53	FK506 BINDING PROTEIN 53 (.1.2...		Potri.012G129200 [exp]	10.81	0.8257
AT5G19260		FAF3	FANTASTIC FOUR 3, Protein of u...		Potri.008G149600 [exp]	15.55	0.7440

Compare expression of checked genes

Potri.007G119800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.