Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77980 98 / 7e-26 MADS AGL66 AGAMOUS-like 66 (.1) AT1G22130 94 / 2e-24 MADS AGL104 AGAMOUS-like 104 (.1) AT1G77950 90 / 2e-23 MADS AGL67 AGAMOUS-like 67 (.1.2) AT2G14210 83 / 6e-21 MADS AGL44, ANR1 ARABIDOPSIS NITRATE REGULATED 1, AGAMOUS-like 44 (.1) AT1G71692 82 / 1e-20 MADS XAL1, AGL12 XAANTAL1, AGAMOUS-like 12 (.1) AT2G45660 82 / 2e-20 MADS ATSOC1, SOC1, AGL20 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1) AT5G10140 80 / 3e-20 MADS FLF, AGL25, FLC FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT4G24540 81 / 4e-20 MADS AGL24 AGAMOUS-like 24 (.1) AT3G57230 81 / 5e-20 MADS AGL16 AGAMOUS-like 16 (.1.2) AT4G11880 80 / 7e-20 MADS AGL14 AGAMOUS-like 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G087500 [exp] 94 / 3e-24 AT1G22130 229 / 9e-73 AGAMOUS-like 104 (.1) Potri.002G092300 [exp] 94 / 3e-24 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.001G058200 [exp] 89 / 3e-23 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.012G100200 [exp] 86 / 5e-22 AT1G26310 149 / 2e-44 CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) Potri.019G077200 [exp] 81 / 3e-20 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.002G079000 [exp] 80 / 6e-20 AT5G20240 238 / 2e-80 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.005G155300 [exp] 81 / 7e-20 AT2G22540 234 / 8e-78 SHORT VEGETATIVE PHASE, AGAMOUS-like 22, K-box region and MADS-box transcription factor family protein (.1.2) Potri.005G182200 [exp] 80 / 8e-20 AT5G20240 244 / 2e-82 PISTILLATA, K-box region and MADS-box transcription factor family protein (.1) Potri.013G102600 [exp] 80 / 8e-20 AT1G71692 250 / 4e-85 XAANTAL1, AGAMOUS-like 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016810 [exp] 94 / 2e-24 AT1G22130 239 / 5e-77 AGAMOUS-like 104 (.1) Lus10022506 [exp] 94 / 3e-24 AT1G22130 277 / 1e-91 AGAMOUS-like 104 (.1) Lus10039704 [exp] 90 / 2e-23 AT1G77980 89 / 7e-21 AGAMOUS-like 66 (.1) Lus10018493 [exp] 90 / 2e-23 AT1G77980 88 / 2e-20 AGAMOUS-like 66 (.1) Lus10024823 [exp] 90 / 5e-23 AT1G22130 142 / 3e-40 AGAMOUS-like 104 (.1) Lus10018714 [exp] 86 / 7e-22 AT1G22130 122 / 7e-33 AGAMOUS-like 104 (.1) Lus10019089 [exp] 88 / 1e-21 AT1G18750 279 / 3e-91 AGAMOUS-like 65 (.1.2) Lus10034464 [exp] 88 / 2e-21 AT1G18750 281 / 1e-88 AGAMOUS-like 65 (.1.2) Lus10031665 [exp] 81 / 2e-20 AT5G62165 179 / 8e-58 FOREVER YOUNG FLOWER, AGAMOUS-like 42 (.1.2.3.4.5) Lus10036543 [exp] 78 / 2e-20 AT2G45660 120 / 6e-36 SUPPRESSOR OF OVEREXPRESSION OF CO 1, AGAMOUS-like 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [poplar] [flax] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Potri.007G120002.1 pacid=42764864 polypeptide=Potri.007G120002.1.p locus=Potri.007G120002 ID=Potri.007G120002.1.v4.1 annot-version=v4.1 ATGGGTCGTAACAAGCTTCCGATGAAGAAAATTGATAATCCCTCCCGTCGTAAAATAACATACTCAAAACGTAGAGATGGGATTATCAAGAAAGCCACTG AATTGTCTGTGCTATGTGATACAGATGTTGGTCTTTTGATGTTTTCTCCTAATGGTAGATTGACTACCTTTGCTAGCAATGGAAGGATTGAAGACGTCTT TCTTCGCTATTTTGACCAGTCCAATGTACTAGAAGCAGGGCGCTTCAGGAGCAACTCGATGAAATCAGCCAGAAACTACAAGAGAGACAAGAAAAGATGA
AA sequence Show only first row Show all	>Potri.007G120002.1 pacid=42764864 polypeptide=Potri.007G120002.1.p locus=Potri.007G120002 ID=Potri.007G120002.1.v4.1 annot-version=v4.1 MGRNKLPMKKIDNPSRRKITYSKRRDGIIKKATELSVLCDTDVGLLMFSPNGRLTTFASNGRIEDVFLRYFDQSNVLEAGRFRSNSMKSARNYKRDKKR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G77980	MADS	AGL66	AGAMOUS-like 66 (.1)		Potri.007G120002 [exp]	0	1
AT1G63770			Peptidase M1 family protein (....		Potri.001G102126 [exp]	20.42	0.7951
					Potri.017G065250 [exp]	69.91	0.7168
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Potri.004G210400 [exp]	74.22	0.7266
AT4G24690		AtNBR1	Arabidopsis thaliana next to B...		Potri.012G085450 [exp]	127.16	0.7138
AT3G24800		PRT1	proteolysis 1 (.1)		Potri.002G241900 [exp]	196.05	0.6283
AT3G55070			LisH/CRA/RING-U-box domains-co...		Potri.010G213950 [exp]	209.97	0.6392
AT2G27040		OCP11, AGO4	OVEREXPRESSOR OF CATIONIC PERO...		Potri.008G010500 [exp]	234.32	0.6679	AGO912

Compare expression of checked genes

Potri.007G120002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.