Plant FIBer expression Database

Potri.007G120101 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.007G120101.3 pacid=42766024 polypeptide=Potri.007G120101.3.p locus=Potri.007G120101 ID=Potri.007G120101.3.v4.1 annot-version=v4.1
ATGCCTCCACTTCCCTTCATTTTCTTCTTCTTCTTCTTCTGTACTTCAAAATCCAACAACAAAATGTGTTATGTAGGGAAAGCAACAAAGATCTTCATTT
TCATTGTGACAGCACTTGTAATTCTTGGTCTTGTCTTGGTATTTGGTCTCTTACGCCACCACCTTCATAAATCACAAAACTGCGCTGATGATTCCTGTCA
ATCTCCTAACTTACCCTTCCCTACTCCTCCTCTTACTGTGCCTACTGGGCTGACCCCACCTAGTCCAATGGGCTTCTCACCGCCCAGCCCACCAGATTCT
GGGTCCACCCCACCACCAAGCCCACCGGACACTGGCACAACTCCTCTTCTGCTGTCACCGCCACCACCTCCTCTTCCGCTCCCACCGCCACCTCTTCCTC
CTCCTGCTGCTCCAGTTACAAATGGGGCTCCACCACCGACTAATAATCCGCCGAGCAGTACTGTGTTGATCACTCCAGGTCCTCTGCATGCTTAG
AA sequence
>Potri.007G120101.3 pacid=42766024 polypeptide=Potri.007G120101.3.p locus=Potri.007G120101 ID=Potri.007G120101.3.v4.1 annot-version=v4.1
MPPLPFIFFFFFFCTSKSNNKMCYVGKATKIFIFIVTALVILGLVLVFGLLRHHLHKSQNCADDSCQSPNLPFPTPPLTVPTGLTPPSPMGFSPPSPPDS
GSTPPPSPPDTGTTPLLLSPPPPPLPLPPPPLPPPAAPVTNGAPPPTNNPPSSTVLITPGPLHA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G22070 proline-rich family protein (.... Potri.007G120101
[exp]
0 1
Potri.009G092300
[exp]
1.00 0.9605 AGP9.1
Potri.001G297466
[exp]
5.09 0.9175
AT4G39410 WRKY ATWRKY13, WRKY1... ARABIDOPSIS THALIANA WRKY DNA-... Potri.007G078200
[exp]
6.55 0.8844 WRKY13.2
AT1G02640 ATBXL2, BXL2 beta-xylosidase 2 (.1) Potri.014G122200
[exp]
9.00 0.9152
AT1G09540 MYB AtMYB61 ARABIDOPSIS THALIANA MYB DOMAI... Potri.013G001000
[exp]
11.22 0.9099
AT2G20760 Clathrin light chain protein (... Potri.011G049500
[exp]
17.49 0.8877
AT5G54240 Protein of unknown function (D... Potri.001G408001
[exp]
20.14 0.9058
AT2G25737 Sulfite exporter TauE/SafE fam... Potri.018G037500
[exp]
20.24 0.9100
AT1G69430 unknown protein Potri.006G155900
[exp]
22.04 0.8904
AT2G45310 GAE4 UDP-D-glucuronate 4-epimerase ... Potri.002G116750
[exp]
23.23 0.8897

Potri.007G120101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.