Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G23180 454 / 3e-151 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G23140 444 / 2e-147 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G05200 430 / 9e-142 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23150 426 / 2e-140 CRK7 cysteine-rich RLK (RECEPTOR-like protein kinase) 7 (.1) AT4G23160 433 / 5e-137 CRK8 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) AT4G23280 410 / 1e-134 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1) AT3G45860 399 / 1e-129 CRK4 cysteine-rich RLK (RECEPTOR-like protein kinase) 4 (.1) AT4G23130 397 / 2e-129 RLK6, CRK5 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) AT4G23230 385 / 2e-126 CRK15 cysteine-rich RLK (RECEPTOR-like protein kinase) 15 (.1) AT4G23190 388 / 8e-126 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G028400 [exp] 469 / 7e-157 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G024800 [exp] 454 / 3e-151 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025200 [exp] 454 / 3e-151 AT4G23180 665 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024900 [exp] 454 / 4e-151 AT4G23180 506 / 1e-171 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 454 / 5e-151 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G025900 [exp] 451 / 8e-150 AT4G23130 573 / 0.0 RECEPTOR-LIKE PROTEIN KINASE 6, cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 5 (.2) Potri.011G030000 [exp] 451 / 1e-149 AT4G21410 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.011G029700 [exp] 447 / 1e-148 AT4G21410 578 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024500 [exp] 446 / 5e-148 AT4G23180 675 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015091 [exp] 589 / 0 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031579 [exp] 567 / 0 AT4G23160 477 / 8e-154 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10031582 [exp] 526 / 8e-180 AT4G05200 436 / 6e-145 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031580 [exp] 525 / 2e-178 AT4G23160 424 / 1e-139 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10015094 [exp] 514 / 2e-174 AT4G23160 432 / 7e-143 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 (.1) Lus10027146 [exp] 498 / 2e-168 AT4G23180 451 / 1e-150 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007632 [exp] 453 / 1e-150 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018382 [exp] 451 / 4e-150 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007633 [exp] 438 / 7e-145 AT4G05200 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10018379 [exp] 421 / 3e-138 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.007G120900.1 pacid=42766128 polypeptide=Potri.007G120900.1.p locus=Potri.007G120900 ID=Potri.007G120900.1.v4.1 annot-version=v4.1 ATGCAATCGATGATGTTAGATGCTAGTTTCTTACTCTTGGTTTCATGTATTCTTCATTTTTACTACCTTTCTAAAGGCCAAGAAGTTACATACTGTGATA ATTCCATGAATTACACTTCTGGGAGTGCCTATCAGCAGAACCTAAATCTTACCCTCACTTCATTAGCTGCAAATGCTTCTTTAACAGGCTACTATATCTC TACTGTGGGGCAGAACCCCAATCTGGTTTATGGACTCATAAATTGTCCAGGTTTTATATCCAACGAAGTTTGCAAAACCTGTGCAAATTCTGTCACTACA AAGATCATCCAACTGTGTCCTAACCAGAAGTCTGCTTCTGTATGCAACGAGAATTGTTCGCTACAGTACTCGGACTCGCAATTTTTCTCAACTGCTGACA GTGCTATAAGGCTTTCTGTTTTCAGCTCGCAGAATGCAGATGACCCCTTTCTTTTCAGGAGTCAATTAGGAAGTTTGCTTGGGAACATCTCAAACAACGC TGCAGCTGACACTTCAAGATTAGCAGTTGGGAGGACTAGTTACACAAGTTCTATTTACATAAATGGTATGGCTCAGTGCACCAGAAACTTAACAGGATCT GAATGTCTTCTCTGCCTTCAAATTATTATCAGCTATATTACATCGCTTTCGAGTGACAGTGTAGGTTTTCGGGTATATACTCTCAGCTGCAATATTCGCT ACGAGATATATTCATTCTTTTCATTGTCATCACTGCCACCACCTCCTCCTCCTCCTCCATCAACTCCAACTCCTCCTCCATCAACTCCAACTCCTCCTCC ATCGGTCCAACCCAATTCAACAGCAACTGCAACAAATGATTCAACTAGTAATGATGGAAAAAGTCCCAACACTGTTGGTACCGTGGTCATATCAGTTGCC GTTACTTTGGCAGTGATTACAGCCATTCTTTGTGGTTTCTTATTTTGGAAAAAGCGAAAGACAAAGAGAGTTGGTGACATAGTTCATCATTCTAGACATG ATGACAGCCAACCATGTAGCCCTGGTGCTGATGAAGAAGGTTATACTACCATAGATTCACTTTCAATTGGACTAAATACACTCAGGGAAGCAACTGGAAA TTTCTGTGATGAATATAAGCTTGGACAAGGTGGCTTCGGTCCAGTTTACAAGGGAAAACTACGTAACGGAACGGAAATTGCTGTAAAAAGGCTTTCAAAT AGCTCAAGACAGGGTTTAGAAGAGCTCAAAACAGAAGTACTGTTGGTTGCTAAACTGCTCCATCGGAACCTGGTATGGCTGTTGGGTTTCTGCTTAGAAG AAGAAGAGAAGCTACTTGTCTATGAGTACCTGCCTAATGGGAGCTTGGACAAAGTCTTATTCGATCAAAATAAACGGTGTAGTCTGGAATGGGAGCGACG ACACGAAATCATCATTGGAATTGCGCGAGGACTACTTTACCTGCACGAAGACTCTCAGCTCAGGATTATTCATCGAGATTTGAAAGCTAGTAATATCCTG TTAGATGAATCTATGCAACCTAAAATCTCTGATTTTGGGCTGGCCAGGCTTTTCTCGGGAAGTCAAACTCAAGGCAATACCAATCGAATTGCTGGCACAT ATGGTTACATGGCACCGGAGTATGCTAAAAAGGGGCACTTTTCAACTAAATCCGATGTCTACAGCTTTGGTATTCTTGTTTTGGAGATTGTCACGGGTCA AAAGATCTCTAGTTTCCGCCACACAATAAATCTTCAAAGCTGTGCATGGCAACACTGGACTAATGGAACAGCTTTAGAGTTGGTGGATCCTACATTAGGT GGCCAATGGCCAGAAAATGAAATTTTGAATTGCATCCACATAGGGTTGCTATGTGTTCAAGAAGCTTTCGCTGACAGACCTACAATGTCACAGATTGTCA TGATGCTGAATGGTTACACTATGACCTCTCCCGCGCCATCACGGCCAGGATTTTACGTGTCAAAGGCAAATTCTGGATCAGCTTCAGGAACAGATGATTC TGGTTCATCTCCGTTGCCAGTGTCATTACAACAATCTGTGAATTGTGTTTCGATCACTGACTTATACCCTCGGTAG
AA sequence Show only first row Show all	>Potri.007G120900.1 pacid=42766128 polypeptide=Potri.007G120900.1.p locus=Potri.007G120900 ID=Potri.007G120900.1.v4.1 annot-version=v4.1 MQSMMLDASFLLLVSCILHFYYLSKGQEVTYCDNSMNYTSGSAYQQNLNLTLTSLAANASLTGYYISTVGQNPNLVYGLINCPGFISNEVCKTCANSVTT KIIQLCPNQKSASVCNENCSLQYSDSQFFSTADSAIRLSVFSSQNADDPFLFRSQLGSLLGNISNNAAADTSRLAVGRTSYTSSIYINGMAQCTRNLTGS ECLLCLQIIISYITSLSSDSVGFRVYTLSCNIRYEIYSFFSLSSLPPPPPPPPSTPTPPPSTPTPPPSVQPNSTATATNDSTSNDGKSPNTVGTVVISVA VTLAVITAILCGFLFWKKRKTKRVGDIVHHSRHDDSQPCSPGADEEGYTTIDSLSIGLNTLREATGNFCDEYKLGQGGFGPVYKGKLRNGTEIAVKRLSN SSRQGLEELKTEVLLVAKLLHRNLVWLLGFCLEEEEKLLVYEYLPNGSLDKVLFDQNKRCSLEWERRHEIIIGIARGLLYLHEDSQLRIIHRDLKASNIL LDESMQPKISDFGLARLFSGSQTQGNTNRIAGTYGYMAPEYAKKGHFSTKSDVYSFGILVLEIVTGQKISSFRHTINLQSCAWQHWTNGTALELVDPTLG GQWPENEILNCIHIGLLCVQEAFADRPTMSQIVMMLNGYTMTSPAPSRPGFYVSKANSGSASGTDDSGSSPLPVSLQQSVNCVSITDLYPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.007G120900 [exp]	0	1
AT1G67550		URE	urease (.1)		Potri.008G177900 [exp]	1.00	0.8973
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	2.00	0.8697
AT4G40070			RING/U-box superfamily protein...		Potri.008G025300 [exp]	4.12	0.7509
AT5G65210	bZIP	TGA1	bZIP transcription factor fami...		Potri.005G082000 [exp]	8.36	0.7905	STGA1.3
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.018G141300 [exp]	10.86	0.6857
AT5G10530			Concanavalin A-like lectin pro...		Potri.003G094700 [exp]	11.95	0.7662
AT3G62150		ABCB21, PGP21	ATP-binding cassette B21, P-gl...		Potri.002G187500 [exp]	12.00	0.7691
AT2G44990		MAX3, CCD7, ATC...	carotenoid cleavage dioxygenas...		Potri.014G056800 [exp]	12.36	0.7833
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Potri.014G038100 [exp]	12.48	0.8027
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.006G023600 [exp]	16.12	0.8096

Compare expression of checked genes

Potri.007G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.