Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	COL13.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21880 291 / 3e-95 CO COL12 B-box type zinc finger protein with CCT domain (.1) AT4G15250 226 / 2e-70 CO COL11 B-box type zinc finger protein with CCT domain (.1) AT3G07650 214 / 1e-65 CO COL9 CONSTANS-like 9 (.1.2.3.4) AT5G48250 209 / 1e-63 CO COL10 B-box type zinc finger protein with CCT domain (.1) AT1G68190 115 / 1e-28 CO B-box zinc finger family protein (.1) AT2G33500 106 / 5e-25 CO COL14 B-box type zinc finger protein with CCT domain (.1.2) AT1G28050 102 / 2e-23 CO COL15 B-box type zinc finger protein with CCT domain (.1) AT2G47890 87 / 3e-19 CO COL13 B-box type zinc finger protein with CCT domain (.1.2) AT1G05290 74 / 4e-14 CCT motif family protein (.1) AT5G15850 72 / 1e-13 CO COL1, ATCOL1 CONSTANS-like 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G039301 [exp] 719 / 0 AT3G21880 288 / 2e-94 B-box type zinc finger protein with CCT domain (.1) Potri.014G170600 [exp] 236 / 2e-73 AT3G07650 328 / 3e-110 CONSTANS-like 9 (.1.2.3.4) Potri.002G214500 [exp] 216 / 7e-66 AT3G07650 355 / 9e-121 CONSTANS-like 9 (.1.2.3.4) Potri.001G061800 [exp] 102 / 2e-23 AT2G33500 213 / 6e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.008G125200 [exp] 101 / 5e-23 AT1G68190 144 / 8e-39 B-box zinc finger family protein (.1) Potri.003G166000 [exp] 97 / 1e-21 AT1G28050 204 / 2e-59 B-box type zinc finger protein with CCT domain (.1) Potri.014G134601 [exp] 85 / 5e-18 AT2G47890 174 / 4e-53 B-box type zinc finger protein with CCT domain (.1.2) Potri.001G323500 [exp] 77 / 3e-15 AT2G33500 213 / 2e-64 B-box type zinc finger protein with CCT domain (.1.2) Potri.002G208100 [exp] 77 / 4e-15 AT2G47890 276 / 4e-91 B-box type zinc finger protein with CCT domain (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015098 [exp] 360 / 3e-122 AT3G21880 260 / 4e-84 B-box type zinc finger protein with CCT domain (.1) Lus10031584 [exp] 352 / 1e-117 AT3G21880 256 / 2e-81 B-box type zinc finger protein with CCT domain (.1) Lus10039695 [exp] 254 / 2e-80 AT4G15250 207 / 4e-63 B-box type zinc finger protein with CCT domain (.1) Lus10036419 [exp] 222 / 3e-68 AT5G48250 332 / 8e-112 B-box type zinc finger protein with CCT domain (.1) Lus10041096 [exp] 138 / 4e-37 AT5G48250 374 / 2e-129 B-box type zinc finger protein with CCT domain (.1) Lus10002578 [exp] 105 / 2e-24 AT1G28050 299 / 3e-97 B-box type zinc finger protein with CCT domain (.1) Lus10001806 [exp] 97 / 1e-21 AT1G28050 298 / 1e-96 B-box type zinc finger protein with CCT domain (.1) Lus10035257 [exp] 86 / 2e-18 AT1G68190 194 / 8e-59 B-box zinc finger family protein (.1) Lus10034625 [exp] 83 / 8e-17 AT1G68190 182 / 3e-52 B-box zinc finger family protein (.1) Lus10040900 [exp] 81 / 2e-16 AT2G47890 289 / 1e-95 B-box type zinc finger protein with CCT domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.007G121200.2 pacid=42764817 polypeptide=Potri.007G121200.2.p locus=Potri.007G121200 ID=Potri.007G121200.2.v4.1 annot-version=v4.1 ATGGAATCTGTATGTGATTTTTGTGGAGTGGAAAAGGCAGTAGTTTATTGTAAACCAGACTCCGCAAAGCTGTGCGTGCACTGTGATGGATGCGTGCATT CGGCTAACTTTTTGTCGCGGAGGCATCGGCGTTCGCTGCTATGTGATAAGTGCAGTTCACTGCCTGCAGTGGCGCGGTGCTTCGATGAAAAGTTGTCTAT TTGTCAAGGATGTGATTGCAGTGCAAATGGATGTTCAAGCTTGGGGCATCAGCTTCGGGCGCTGAATTGTTATACAGGGTGTTATTCCTTGGCTGAGTTT TCGAAGATTTGGTCGTCGGTTCTTGAGGGATCCTCTTCAGGAGGCTTTGATTCAGGATGGGATTCACTCAATTCTGCGCCAATAAATGAGAATTGCATTA GTAGTTGCTTGGAACAAAGGGATAATGAGGGGTCATTCGGCTTGTTTACTGGAAAGTTGAATGAACTAGAATCTTGTTCCAAGCTTGAGCCTTGGAGGGG GCCGCCGAGCATCATCATGCCGAATCCAAATTACATGCCTTGTTGTAGAGATCAGGTGTCTATGTTTCCAGAAGTGACAAATCTGCCGAAGCAGGGTTGC TCCATCTTTAAGGATATTGGACTTCCGGATGGTGAAGATCTCTGTGAAGGTCTCAACTTGGACGATATACCATTGGACTTTGAAAACAGTGACGAAATAT TTAGTTGTTCAGAAACTCAAAGCAAATATCAGTTTGGGGATGTAGGAAAAGACTGCATGTTAATGGAGAAAAACTTATCAGTTACCGGGTCTAATGGTCC TATCGAGAATACTATAGAGGTGTCATCATCGGGACAACTGGAATGTGCTGCTTTCCAATCATCCTGTGTTTCTGGGCCAGCTAGCGCAATGCAGACCATA AGTGGTAATGCTAATTGCAGCATATTTACGAATCCCAGTTGCTGCAAAAACCTCAATCTAGGATTCCCTGCTGTTTCTGGACAAGTTCATTCAAGCATGT CTCTTCCACTATCCAACATAATTGGTGAAAGTAGTGCAGCTGATTATCAAGATTGCGGATTATCACCACTATTTCTGACTGGTGAATCACCATGGGAATC GCATTTGGATGCTAGCTCGCCGCAGGCAAGAGACAAGGCTAAGATGAGATACAATGAAAAGAAGAAGACGCGAACTTTCAGCAAGCAAATCAGATATGCC TCTCGTAAAGCCAGGGCTGATACTCGAAAACGAGTAAAAGGTAGATTTGTTAAAGCTGGGGAAGCATATGATTATGATCCGCTTCTGTCAAGCAACTTCT GA
AA sequence Show only first row Show all	>Potri.007G121200.2 pacid=42764817 polypeptide=Potri.007G121200.2.p locus=Potri.007G121200 ID=Potri.007G121200.2.v4.1 annot-version=v4.1 MESVCDFCGVEKAVVYCKPDSAKLCVHCDGCVHSANFLSRRHRRSLLCDKCSSLPAVARCFDEKLSICQGCDCSANGCSSLGHQLRALNCYTGCYSLAEF SKIWSSVLEGSSSGGFDSGWDSLNSAPINENCISSCLEQRDNEGSFGLFTGKLNELESCSKLEPWRGPPSIIMPNPNYMPCCRDQVSMFPEVTNLPKQGC SIFKDIGLPDGEDLCEGLNLDDIPLDFENSDEIFSCSETQSKYQFGDVGKDCMLMEKNLSVTGSNGPIENTIEVSSSGQLECAAFQSSCVSGPASAMQTI SGNANCSIFTNPSCCKNLNLGFPAVSGQVHSSMSLPLSNIIGESSAADYQDCGLSPLFLTGESPWESHLDASSPQARDKAKMRYNEKKKTRTFSKQIRYA SRKARADTRKRVKGRFVKAGEAYDYDPLLSSNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21880	CO	COL12	B-box type zinc finger protein...		Potri.007G121200 [exp]	0	1	COL13.2
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Potri.014G070800 [exp]	7.41	0.9413
AT2G03830		RGF8	root meristem growth factor 8,...		Potri.010G138001 [exp]	8.94	0.9347
AT2G02220		ATPSKR1	phytosulfokin receptor 1 (.1)		Potri.008G144700 [exp]	12.24	0.8745	Pt-PSKR.2
AT5G44440			FAD-binding Berberine family p...		Potri.011G162666 [exp]	13.19	0.9233
AT4G14465	AT-hook	AHL20	AT-hook motif nuclear-localize...		Potri.008G164466 [exp]	14.07	0.9296
AT1G02460			Pectin lyase-like superfamily ...		Potri.014G115700 [exp]	16.27	0.8858
AT1G22430			GroES-like zinc-binding dehydr...		Potri.019G041500 [exp]	17.32	0.9284
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Potri.018G029100 [exp]	17.83	0.8471
AT1G71980			Protease-associated (PA) RING/...		Potri.019G082500 [exp]	18.00	0.8460
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Potri.006G123400 [exp]	19.23	0.9244

Compare expression of checked genes

Potri.007G121200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.