Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21810 187 / 2e-54 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G140800 [exp] 42 / 0.0005 AT1G32360 355 / 3e-121 Zinc finger (CCCH-type) family protein (.1) Potri.009G130600 [exp] 42 / 0.0008 AT3G19360 276 / 9e-91 Zinc finger (CCCH-type) family protein (.1) Potri.004G169500 [exp] 42 / 0.0008 AT3G19360 284 / 1e-93 Zinc finger (CCCH-type) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031572 [exp] 251 / 2e-79 AT3G21810 176 / 2e-50 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10015103 [exp] 243 / 2e-76 AT3G21810 170 / 2e-48 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.007G121700.2 pacid=42765547 polypeptide=Potri.007G121700.2.p locus=Potri.007G121700 ID=Potri.007G121700.2.v4.1 annot-version=v4.1 ATGGCGGAAAGGAAGCTCTTCAAGACGAAGCTATGCGTATTATACCGAAAAGGCCGCTGTCATCGTCAAAATTGCTCTTTTGCTCATGGAAACGCCGAGC TTCGTCAATCCATGCCTTCTCGTTATGGTACGCGGGACTATCGAGGTGGTGACTTGAGGGATAAACTTGATCAAAGGCTTTCTCCTAAGCGCCAGTATTC CCCAGGAAAAGATGCAAACAGACGAGACTCATTTCGTGGATCCAGCCCTTCCAGGTCTCTTGAGAAAAGCAATGACAGAAAACGTAGGAAGAAACAGCAG TATGATGGCCAAAGTGATTTCTCTGGGAGTCTGAAAGTCTCAGATAGGGCAGATGACCAAGTTAAAGAAAGAAAAGGTGCATCATCTGAGCTAAAAGAAA TGCAGTCAAACATCAACAAGCTTGAGCACCACAAATCTGAATTAATGATCTTACTGGAAAAGAAAACTGAAGAAGCAGATAGTCTTATTTCTAGAATTCA GGAGCTTGAGGCTCAATTATCTGCAGAGAAAGAGGAATGTAAAAGGATCACTTCAAACATCAAGAAGTTTGTCAAAGCATATAAGCACTATGTGCAGGCT CAAGATGAACTTAAAAGGTCAGAAGTTCGATTTAAGAAGTTGGGAGATCAGCTTGTTTCTGGTACTGCAACTGATTGCAATGAAGAGGATTCAAGCATCA AAATTGTCAATGATGGAGAGATAAATGGTCATTGTGCAATCAGCGCACAGAATGAGATGCGAAAGCAGAATAATTCCTCTCCAATTGAGAAAAGTTTGGG TGGTAAACAGTATACCGCTGAAAAATCAACACAAGGCAATTTAACCAATGGTGGCCATCAGGCAGAGACTCTAAGACTGAGTAAGCTTTCCCAATTTCAT TCACACCCTGTTCAGCTGAATAGCAACCTGGAATTTGGGGTGGTGGACAATAGGAATAACAGTCATTTTCCTATAGGAAATGAAGGCAAGCAAAAGAAAG GAAAAGGTGTTTCCGCCAGTATTCCCTTGGATAAGGTACCATCAACCAGCATGGCTGCTCGTGCAATTGATGACCTAGTTGAAATTGAAATGGAGGAGAA TGTTGAAGTGGTTGAAAATATTTCTCGGGGGATTGTTAGAGGAGGTGCTACATATGAGGCCCGAAGCTTGCCATTTTCACTTCCCCCACCTCCTCCAATC CATCGAAATACCCATTCAAAGTATGAGGGTGAAGATGAGAATGTAGATGTTGGAGGCCTAGAGGAGGAGATGGTGGATATCGATATAGTCTGA
AA sequence Show only first row Show all	>Potri.007G121700.2 pacid=42765547 polypeptide=Potri.007G121700.2.p locus=Potri.007G121700 ID=Potri.007G121700.2.v4.1 annot-version=v4.1 MAERKLFKTKLCVLYRKGRCHRQNCSFAHGNAELRQSMPSRYGTRDYRGGDLRDKLDQRLSPKRQYSPGKDANRRDSFRGSSPSRSLEKSNDRKRRKKQQ YDGQSDFSGSLKVSDRADDQVKERKGASSELKEMQSNINKLEHHKSELMILLEKKTEEADSLISRIQELEAQLSAEKEECKRITSNIKKFVKAYKHYVQA QDELKRSEVRFKKLGDQLVSGTATDCNEEDSSIKIVNDGEINGHCAISAQNEMRKQNNSSPIEKSLGGKQYTAEKSTQGNLTNGGHQAETLRLSKLSQFH SHPVQLNSNLEFGVVDNRNNSHFPIGNEGKQKKGKGVSASIPLDKVPSTSMAARAIDDLVEIEMEENVEVVENISRGIVRGGATYEARSLPFSLPPPPPI HRNTHSKYEGEDENVDVGGLEEEMVDIDIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21810	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Potri.007G121700 [exp]	0	1
AT3G49725			GTP-binding protein, HflX (.1)		Potri.007G007700 [exp]	5.91	0.8546
					Potri.007G113550 [exp]	6.78	0.8373
AT5G46070			Guanylate-binding family prote...		Potri.017G016800 [exp]	7.34	0.8524
AT4G35520		MLH3, ATMLH3	MUTL protein homolog 3 (.1)		Potri.005G101900 [exp]	8.94	0.8620
AT1G30970	C2H2ZnF	SUF4	suppressor of FRIGIDA4, zinc f...		Potri.003G074200 [exp]	10.39	0.8395
AT1G19485			Transducin/WD40 repeat-like su...		Potri.006G036601 [exp]	13.78	0.8393
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.005G054900 [exp]	14.42	0.8544
AT1G05270			TraB family protein (.1)		Potri.007G121800 [exp]	16.73	0.8332
AT4G36980			unknown protein		Potri.005G138200 [exp]	17.60	0.8469
AT3G45100		SETH2	UDP-Glycosyltransferase superf...		Potri.016G130000 [exp]	20.78	0.8150

Compare expression of checked genes

Potri.007G121700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.