Plant FIBer expression Database

Potri.007G121800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05270 324 / 4e-109 TraB family protein (.1)
AT2G32340 296 / 3e-98 TraB family protein (.1)
AT5G52030 83 / 3e-17 TraB family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G121900
[exp]
427 / 3e-149 AT1G05270 404 / 7e-140 TraB family protein (.1)
Potri.017G038500
[exp]
414 / 3e-145 AT1G05270 417 / 1e-146 TraB family protein (.1)
Potri.012G133900
[exp]
100 / 2e-23 AT5G52030 426 / 7e-149 TraB family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015104
[exp]
342 / 2e-116 AT1G05270 447 / 4e-158 TraB family protein (.1)
Lus10031571
[exp]
284 / 3e-94 AT1G05270 368 / 3e-127 TraB family protein (.1)
Lus10038420
[exp]
281 / 9e-92 AT1G05270 371 / 6e-127 TraB family protein (.1)
Lus10023387
[exp]
219 / 2e-66 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1)
Lus10015005
[exp]
101 / 3e-23 AT5G52030 461 / 5e-156 TraB family protein (.1.2)
Lus10038884
[exp]
97 / 4e-22 AT5G52030 458 / 3e-161 TraB family protein (.1.2)
Lus10038419
[exp]
66 / 4e-12 AT1G05270 68 / 3e-13 TraB family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0572 TIKI PF01963 TraB TraB family
Representative CDS sequence
>Potri.007G121800.1 pacid=42764958 polypeptide=Potri.007G121800.1.p locus=Potri.007G121800 ID=Potri.007G121800.1.v4.1 annot-version=v4.1
ATGAAGACTCGATATGTAAAGCGGATGACTCGCTCACTACTCACCCAGCTAAGCTCACCACACTCGCACCGCTTCTTCTCGAGCACTACCACCACCAAAT
CTCCTCTTCGCCACCACCAAACCACCCTCATTTCCACTCGACCCACCTACTCGCCCCCCAAATTCCTCCGAATTACCACATTTGCCACAAAAAACGAGAG
CATATTTGATGCTGCTGACGAACTTAGGGAGGATGATAATAAACACGACGTCGCGTCGGAGAGGAAGGAGCCACTACATGAATTTTCTAGAAACGTAGTG
GTTCTCACGTGCGAGTCGAAAGCTGAGGGTGGCAAGTGTGTGGTTTATTTAGTTGGCACTGCTCATGTTTCTCAGGCATCATGCAGGGAAGTAGAAGCTG
TAATCCGTCATGTGAAACCACAGGTTGTATTTCTGGAATTGTGTGCAAGTAGAGTCGGTCTGCTTACCATTCGGAATTTAAAGGTACCAACAATGAAGGA
AATGATAGAAAAGTGGAAGAAAACACAAAACGCGGCTCAAATTTTTCTTAGCTGGTTCTATGCCACCGTTGGTGATAAGCTTGGAGTTGTTCCTGGTTCT
GAGTTCCAGGTAGCATTTGAAGAAGCAAGAAAATGTGAGGCCAAGGTGGTACTTGGTGATCGCCCTGCACAGATTACTTTCAGGAGGACACAAGGTAAGT
TGCCTTTTTGGCATAAAGTAAAATTCTTGTGTGCTGTATTTGTTCAAACATTATTTTCATCGAGCTCTAAGAGTATCGACACAATGATAAAAGACTTGGA
TGATGTTAAGAAGGTTACTATTTCAACTAAAAAACTAAGCAAGCAGTACCCCACTGTAATGGAAACCGTTGTGGACGAACGAGATCAGTACATGTCATCG
ATCCTGCTAAGAATCGCCAAAGAACATACTTCGGTCGTAGCAGTCATCGGAAAAGGGCATTTGCAAGGAATTAAGAAGTATTGGGAGCAACCTATTGAGT
TGAAGGATCTTCTTGAACTTCCTCCTCAGAAACCACCCTTTTCAGCTCTGAAGGTTCTTGCAGTTGCTGGTATGGCCATTGGTTCAGCATTTATCTTTCA
AGCAAGAAATAGCTAA
AA sequence
>Potri.007G121800.1 pacid=42764958 polypeptide=Potri.007G121800.1.p locus=Potri.007G121800 ID=Potri.007G121800.1.v4.1 annot-version=v4.1
MKTRYVKRMTRSLLTQLSSPHSHRFFSSTTTTKSPLRHHQTTLISTRPTYSPPKFLRITTFATKNESIFDAADELREDDNKHDVASERKEPLHEFSRNVV
VLTCESKAEGGKCVVYLVGTAHVSQASCREVEAVIRHVKPQVVFLELCASRVGLLTIRNLKVPTMKEMIEKWKKTQNAAQIFLSWFYATVGDKLGVVPGS
EFQVAFEEARKCEAKVVLGDRPAQITFRRTQGKLPFWHKVKFLCAVFVQTLFSSSSKSIDTMIKDLDDVKKVTISTKKLSKQYPTVMETVVDERDQYMSS
ILLRIAKEHTSVVAVIGKGHLQGIKKYWEQPIELKDLLELPPQKPPFSALKVLAVAGMAIGSAFIFQARNS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05270 TraB family protein (.1) Potri.007G121800
[exp]
0 1
AT3G49725 GTP-binding protein, HflX (.1) Potri.007G007700
[exp]
2.00 0.8652
AT3G23590 MED33A, RFR1 REF4-related 1 (.1) Potri.016G142500
[exp]
2.64 0.8388
AT4G03260 Outer arm dynein light chain 1... Potri.013G150300
[exp]
3.00 0.8505
AT1G16540 ACI2, ABA3, SIR... SIRTINOL RESISTANT 3, LOW OSMO... Potri.007G066400
[exp]
6.32 0.8431 Pt-ABA3.1
AT1G62930 RPF3 RNA processing factor 3, Tetra... Potri.006G271200
[exp]
8.48 0.8340
AT1G55350 EMB80, ATDEK1, ... EMBRYO DEFECTIVE 80, embryo de... Potri.001G003900
[exp]
11.83 0.8261
AT1G20760 Calcium-binding EF hand family... Potri.007G063200
[exp]
12.00 0.8200
AT4G03090 sequence-specific DNA binding;... Potri.002G213400
[exp]
13.03 0.8218
AT5G61460 SMC6B, ATRAD18,... STRUCTURAL MAINTENANCE OF CHRO... Potri.003G107700
[exp]
14.42 0.8038
AT2G36720 Acyl-CoA N-acyltransferase wit... Potri.016G097300
[exp]
14.49 0.8417

Potri.007G121800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.