Plant FIBer expression Database

Potri.007G121900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G05270 404 / 7e-140 TraB family protein (.1)
AT2G32340 369 / 3e-126 TraB family protein (.1)
AT5G52030 92 / 2e-20 TraB family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G038500
[exp]
568 / 0 AT1G05270 417 / 1e-146 TraB family protein (.1)
Potri.007G121800
[exp]
434 / 6e-152 AT1G05270 323 / 6e-109 TraB family protein (.1)
Potri.012G133900
[exp]
104 / 9e-25 AT5G52030 426 / 7e-149 TraB family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10015104
[exp]
421 / 5e-147 AT1G05270 447 / 4e-158 TraB family protein (.1)
Lus10031571
[exp]
367 / 3e-126 AT1G05270 368 / 3e-127 TraB family protein (.1)
Lus10038420
[exp]
347 / 1e-116 AT1G05270 371 / 6e-127 TraB family protein (.1)
Lus10023387
[exp]
262 / 3e-82 AT3G16780 343 / 1e-116 Ribosomal protein L19e family protein (.1)
Lus10015005
[exp]
102 / 3e-23 AT5G52030 461 / 5e-156 TraB family protein (.1.2)
Lus10038884
[exp]
98 / 3e-22 AT5G52030 458 / 3e-161 TraB family protein (.1.2)
Lus10038419
[exp]
64 / 2e-11 AT1G05270 68 / 3e-13 TraB family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0572 TIKI PF01963 TraB TraB family
Representative CDS sequence
>Potri.007G121900.1 pacid=42765434 polypeptide=Potri.007G121900.1.p locus=Potri.007G121900 ID=Potri.007G121900.1.v4.1 annot-version=v4.1
ATGAATCGCTTGACTCGCTCACAACTCTCCCTCCTTAACTCACCCGATTCACACCGATTTTTCACTACCATCACTACGAAACTCCCTCTCCGCCACCCCC
AAACCACCTTCAATTTCTCTCACTCAATCTACTCACGCCGAAAGTTCCCCCAAATTATCACCTTTGCTACCAAAAAACCCACAAATCCTATAATTGCCGA
CCCGAACCGGAATCCTATGGATCCGAACCCTTCTAAAGAGGATTTTGTTCACATCGAAAGTCCTAGCAATAACGATAATCATTTAAGCGAAAGCATAGTT
GATGTTGCTAATGAACTTAGCGAGGATGATAACAAAAACGACGTCGTGATGGGGAGGAAGGAGCTACCAGAGGAACTTTCTAGAAGCGTTATGGTTCTCA
CGTGCGAGTCGAAAGCTGAAGGTGGCACTTGTGTCGTGCATTTAGTTGGTACTGCTCATGTTTCTCAGGAATCATGCCGGGAAGTACAAGCTGTAGTCAG
TTACTTGAAACCACAGGTTGTATTTCTGGAATTGTGTGCGAGTAGAGTGGCTGTGCTTACTCCTCAGAATTTAAAGGTGCCAACTATGGGGGAAATGATA
GAGATGTGGAAGAAAAATCATAACGCATTTGGAATTCTTTATAGCTGGTTTCTTGCCAAGGTTTCTGATAAGCTTGAAGTTTTTCCTGGTTCTGAGTTCC
GGGTAGCATTTGAAGAAGCGAGAAAGTATGAGGGTAAGGTAGTACTTGGTGATCGTCCTGTACAGATTACTTTGCAGAGGACATGGGGTAAAATGCCACT
TTGGCATAAAGTGAAATTGCTGTACTCGTTACTTTTTCAAGCGTTATTTTTACCAAGCTCTGAGGATCTTGACAAAATGCTAAAAGAAATGGATGATGTT
GACATGCTGACTCTTGTCATTCAAGAAATGAGCAAGCAGTTCCCCACTCTAATGGATACCCTTGTGCATGAGCGAGATCAGTACATGTCGTCAACGCTAC
TAAGAATTGCTAAAGAACACACTTCAGTCGTTGCAGTAGTTGGAAAGGGGCATTTGCAAGGGATTAAGAAACATTGGGGGCAACCTTTTGAGATGAAGGA
TCTTATGGAAATTCCTTCACAGAAACCAGCTGTTTCAGCTCGGAAGGTTCTTGCATCTCTAGGTGTTGCAGTTGCTGGTGTGGCTATTGTTTCAGGCTTT
TACCTTTCACGCAAGAAATAG
AA sequence
>Potri.007G121900.1 pacid=42765434 polypeptide=Potri.007G121900.1.p locus=Potri.007G121900 ID=Potri.007G121900.1.v4.1 annot-version=v4.1
MNRLTRSQLSLLNSPDSHRFFTTITTKLPLRHPQTTFNFSHSIYSRRKFPQIITFATKKPTNPIIADPNRNPMDPNPSKEDFVHIESPSNNDNHLSESIV
DVANELSEDDNKNDVVMGRKELPEELSRSVMVLTCESKAEGGTCVVHLVGTAHVSQESCREVQAVVSYLKPQVVFLELCASRVAVLTPQNLKVPTMGEMI
EMWKKNHNAFGILYSWFLAKVSDKLEVFPGSEFRVAFEEARKYEGKVVLGDRPVQITLQRTWGKMPLWHKVKLLYSLLFQALFLPSSEDLDKMLKEMDDV
DMLTLVIQEMSKQFPTLMDTLVHERDQYMSSTLLRIAKEHTSVVAVVGKGHLQGIKKHWGQPFEMKDLMEIPSQKPAVSARKVLASLGVAVAGVAIVSGF
YLSRKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G05270 TraB family protein (.1) Potri.007G121900
[exp]
0 1
AT3G54680 proteophosphoglycan-related (.... Potri.013G120700
[exp]
4.79 0.8772
AT1G77590 LACS9 long chain acyl-CoA synthetase... Potri.005G177500
[exp]
7.14 0.8461
AT1G79160 unknown protein Potri.011G153600
[exp]
15.03 0.8705
AT4G17940 Tetratricopeptide repeat (TPR)... Potri.002G256900
[exp]
20.34 0.8686
AT1G75170 Sec14p-like phosphatidylinosit... Potri.005G123200
[exp]
21.07 0.8539
AT2G18600 Ubiquitin-conjugating enzyme f... Potri.014G041466
[exp]
21.07 0.7818
AT4G12250 GAE5 UDP-D-glucuronate 4-epimerase ... Potri.003G114600
[exp]
21.54 0.8684
AT5G19430 RING/U-box superfamily protein... Potri.009G070600
[exp]
22.27 0.7555
AT3G05880 RCI2A RARE-COLD-INDUCIBLE 2A, Low te... Potri.013G001600
[exp]
23.87 0.8618 Pt-RCI2.1
AT2G26110 Protein of unknown function (D... Potri.006G228800
[exp]
24.24 0.8527

Potri.007G121900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.